Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65610 694 / 0 ATGH9A2 ,KOR2 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) AT5G49720 663 / 0 TSD1, IRX2, DEC, RSW2, OR16PEP, KOR1 ,AtGH9A1 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) AT4G24260 574 / 0 ATGH9A3 ,KOR3 glycosyl hydrolase 9A3 (.1) AT1G75680 311 / 2e-98 ATGH9B7 glycosyl hydrolase 9B7 (.1) AT1G19940 308 / 1e-97 ATGH9B5 glycosyl hydrolase 9B5 (.1) AT4G02290 302 / 2e-95 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 301 / 2e-95 ATCEL2 cellulase 2 (.1) AT1G64390 291 / 6e-90 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT1G71380 285 / 3e-89 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G11050 287 / 3e-88 ATGH9C3 glycosyl hydrolase 9C3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177300 [exp] 1024 / 0 AT1G65610 724 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Potri.003G151700 [exp] 663 / 0 AT5G49720 910 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.001G078900 [exp] 659 / 0 AT5G49720 904 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.005G188500 [exp] 421 / 5e-140 AT5G49720 418 / 9e-139 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Potri.002G202400 [exp] 312 / 3e-99 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 308 / 1e-97 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.005G115400 [exp] 301 / 6e-95 AT1G19940 586 / 0.0 glycosyl hydrolase 9B5 (.1) Potri.001G083200 [exp] 298 / 3e-94 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.005G237700 [exp] 298 / 9e-94 AT1G19940 678 / 0.0 glycosyl hydrolase 9B5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026863 [exp] 789 / 0 AT1G65610 747 / 0.0 KORRIGAN 2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, Six-hairpin glycosidases superfamily protein (.1) Lus10012162 [exp] 643 / 0 AT5G49720 989 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10026275 [exp] 633 / 0 AT5G49720 986 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10007584 [exp] 401 / 2e-135 AT5G49720 565 / 0.0 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10036331 [exp] 409 / 3e-135 AT5G49720 483 / 6e-164 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10018918 [exp] 397 / 9e-131 AT5G49720 423 / 1e-140 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10010029 [exp] 393 / 1e-130 AT5G49720 465 / 1e-158 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10028619 [exp] 384 / 2e-125 AT5G49720 410 / 3e-135 TUMOROUS SHOOT DEVELOPMENT 1, RADIALLY SWOLLEN 2, KORRIGAN 1, KORRIGAN, IRREGULAR XYLEM 2, DEFECTIVE CYTOKINESIS, glycosyl hydrolase 9A1 (.1) Lus10008208 [exp] 308 / 7e-98 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10032377 [exp] 298 / 2e-92 AT1G64390 989 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF00759 [poplar] [flax] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Potri.008G079500.1 pacid=42808137 polypeptide=Potri.008G079500.1.p locus=Potri.008G079500 ID=Potri.008G079500.1.v4.1 annot-version=v4.1 ATGCATTCAGCAAATCATTGGGGGGGGTCGCTGGAGATTTACAATGGAGCAGAATCAACAACCGACGATGAGAAGAGTCGCAACATGGAGTGGGACAAGG CAGCCTTGCAACCCCAGCATCATCATCTAGACGAGACACAGCAGAGCTGGTTATTGTACCCTCAAGAGACCAAGAAAAAGAAGCACGTAGACTTGGGTTG CGTAGCCTGTAGCCACAAAGCCTTGAAGTGGACTCTCTATGCCTTTGTTTTTGCGCTTCTTGTTATTGCACTCCCTATCATCCTAGTCAAGACTTTGCCA AAGCACAACTCTAAGCCTCCTCCTCCAGACAATTACACTCTTGCCCTCCGAAAGGCTCTTCTCTTCTTCAATGCCCAAAAATCTGGTAAATTGCACAAGA ACAACGGAATTCCATGGAGAGGAGATTCAGGGCTACAAGATGGAAATGGTACTGATTTTTCTAAAGCAGGTCTTGTTGGAGGATACTATGATGCTGGAGA CAACACCAAGTTTCATTTTCCCATGGCATTTGCCATGACTATGTTGAGCTGGAGTGTCATTGAATACAGACAGAAGTATGAGGCCATTGGCGAGTACCAG CATACCAGAGATCTAATCAGGTGGGGTACTGATTACTTGCTATTAACCTTCAACTCCAGTGCCAGCAAAATTGACAAAATTTACTGCCAGGTTGGTGGAT CTCGAAATGGCTCGATACTTCCAGATGATCATTACTGCTGGCAAAGACCTGAAGATATGGACTATCCGAGGCCTACCCAAGTTGTAAATTCAGGCGCTGA CCTTGCCGGAGAAATGGCAGCAGCCTTGGCTGCAGCCTCAATAGTATTCCGAGACAATGAGGCCTATTCAAAAAAGCTTGTAAGAGGTGCAGTGACAGTA TATGACTTTGCCAGGGATGGTGGAAGACGGGGAGCATATTCTTCTGGGAATGATTACATTCAACCTTACTACAACTCCACTGGCTATTATGATGAGTACA TTTGGGGTGCTACTTGGTTGTACTACGCCACAGGAAACATCACCTATATTAAATTGGCAACTGAACCAGGCTTCTCTAAGCACTCCAAAGCACTTTTAAG TATTCCTGACTTGAGTGTACTGAGTTGGGACAACAAGTTACCAGCAGCTATGCTGCTGTTAACAAGGTACAGGATATTCTTGAATCCAGGATATCCATAT GAGGAGATGTTGCATATGTATCATCAAAAGACAGAACTTAACATGTGTTCTTATTTTCAGCAATTCGATGTATTCAACTGGACTAAAGGAGGAATGATCC AACTGAACCATGGAACGCCACAACCTCTTCAGTATGTGGCTAATGCTGCCTTCTTAGCATCACTCTATGTCGATTATCTGAATGCCACTAGAGTTCCAGG ACTCAATTGTGGTCCCAAATTTATCTCACTGGACCTTCTTCGGAGTTTCGCCACGTCACAGATCAACTACATTCTAGGTGATAACCCCATGAAAATGAGC TATGTGGTGGGGTATGGGACCAAGTTTCCCAGGCATGTTCATCACCGTGGAGCATCAACACCCAGTGACAAAACAAGGTATTCGTGCACAGGCGGATGGA AGTGGCGTGACAGCTCCAAGCCCAATCCTCACAACATTACAGGAGCCATGGTTGGAGGGCCTGATAGGTTTGACCAGTTCCGTGATGTTCGCACTAATTA CAACTTTACCGAACCAACTTTAGCTGGAAATGCAGGACTAGTTGCTGCGCTTGCATCCTTGACAAGCAGTGGTGGGATTGGCATCGATAAGAATTCAATC TTTACAGCAGTTCCACCGCTCTACCCTCCAAGCCCTCCATCTCCTCCAGCTTGGAAGCCTTGA
AA sequence Show only first row Show all	>Potri.008G079500.1 pacid=42808137 polypeptide=Potri.008G079500.1.p locus=Potri.008G079500 ID=Potri.008G079500.1.v4.1 annot-version=v4.1 MHSANHWGGSLEIYNGAESTTDDEKSRNMEWDKAALQPQHHHLDETQQSWLLYPQETKKKKHVDLGCVACSHKALKWTLYAFVFALLVIALPIILVKTLP KHNSKPPPPDNYTLALRKALLFFNAQKSGKLHKNNGIPWRGDSGLQDGNGTDFSKAGLVGGYYDAGDNTKFHFPMAFAMTMLSWSVIEYRQKYEAIGEYQ HTRDLIRWGTDYLLLTFNSSASKIDKIYCQVGGSRNGSILPDDHYCWQRPEDMDYPRPTQVVNSGADLAGEMAAALAAASIVFRDNEAYSKKLVRGAVTV YDFARDGGRRGAYSSGNDYIQPYYNSTGYYDEYIWGATWLYYATGNITYIKLATEPGFSKHSKALLSIPDLSVLSWDNKLPAAMLLLTRYRIFLNPGYPY EEMLHMYHQKTELNMCSYFQQFDVFNWTKGGMIQLNHGTPQPLQYVANAAFLASLYVDYLNATRVPGLNCGPKFISLDLLRSFATSQINYILGDNPMKMS YVVGYGTKFPRHVHHRGASTPSDKTRYSCTGGWKWRDSSKPNPHNITGAMVGGPDRFDQFRDVRTNYNFTEPTLAGNAGLVAALASLTSSGGIGIDKNSI FTAVPPLYPPSPPSPPAWKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	0	1
					Potri.001G130800 [exp]	2.44	0.9722
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	3.87	0.9737	Pt-PRX1.7
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	5.19	0.9688
					Potri.013G045500 [exp]	7.00	0.9589
AT1G08930		ERD6	EARLY RESPONSE TO DEHYDRATION ...		Potri.013G027700 [exp]	7.21	0.9628
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Potri.002G007000 [exp]	7.34	0.9595
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071300 [exp]	8.36	0.9611
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	11.40	0.9560
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.002G258700 [exp]	11.48	0.9423	PTR2.1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	13.78	0.9519	2OGox20

Compare expression of checked genes

Potri.008G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.