Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16300 1360 / 0 Vps51/Vps67 family (components of vesicular transport) protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177200 [exp] 1853 / 0 AT5G16300 1486 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041337 [exp] 1442 / 0 AT5G16300 1382 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein Lus10037382 [exp] 962 / 0 AT5G16300 868 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF08700 [poplar] [flax] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Potri.008G079700.1 pacid=42805750 polypeptide=Potri.008G079700.1.p locus=Potri.008G079700 ID=Potri.008G079700.1.v4.1 annot-version=v4.1 ATGAGAGTATCTACACCCTCCGCTACCGACGACCGCGCCGCCACGCTGAGCGGCGGAGGCTATCGGGACGCCGAATCACTACTCCGTTCAAAAACCATAT CCGAAATCCGCAATGTCGAATCTGCAACTCGACAGCAAATCGAAGAAAAGAAAGAAGAGCTTCGTCAATTAGTCGGTAACCGATATCGTGACCTAATTGA TTCGGCCGATTCTATCGTTCTCATGAAATCCTATTGTGGATCAATCTCGCATAACATCGCATCGATTCACATCAGCATTCGCTCCCTTTCTGCTTCTCCG TTATCAGAAACCCCCAAATTCACAAACCCTAGCTCTACGCGTGGTAAAATTTATGGGATCGCGTGTCGGGTCAAGTATTTAGTTGATACCCCGGAGAATA TCTGGGGATGCTTGGACGAATTCATGTTTTTGGAGGCAGCAGGGAGGTATACACGTGCAAAGCACGTGCAGAATACGTTGATGAGTAGTGATTATAATAA GATCTTGTCGAATTTCCCACTCTTGCAGCATCAATGGCAGATTGTGGAGAGTTTGAAAGTGCAGATTTCACAGAAAAGTCGCGAGAGGTTGTCAGATCAA GGGTTGGGAATTGGGGGTTATGCGGATGCGTTGGCTGCGGCAGCAGTGATTGATGCATTGGAGCCTGATCAGGTATTGGGTTTGTTTCTTGATAGCAGAA AGTCATGGATTTCACAAAAATTAGGGGGTTTCGGTTGGGTTGATGTAAAAAATGATAATGTCAGTGGTGAGGTTGTCGTTTTTGTGTTTTGTGAAGTCTT AAAGATAATTCAAGTTAGTGTGGGACAAGTAGGAGAGTTGTTTTTGCAAGTTTTGAATGACATGCCTTTGTTTTATAAAGTTATTTTAGGTTCTCCTCCC GCTTCCCAATTGTTTGGGGGGATTCCGAATCCAGATGAGGAAGTGAGATTGTGGAAATTGTTTAGGGAAAAGCTCGAGTCTGTGAATGTTGCTCTAGATA AAGAATATATTGCCAGGACTTGTTTGAGTTGGTTGAGGGATTGTGGCGGAGAGATTGTGAGTAAGATTAATGGGAGGTTCTTGATTGATGCGATTGCCAC GGGTGGAGAGCTTGCGGTGGCTGAGAAGATGATTAGGGAGACTATGGGTAGTAAGCAGGTATTGGAGGGAAGTTTGGATTGGCTCAAGAGTGTTTTTGGG TCTGAGATTGAGTTGCCTTGGAGTAGGATCCGAGAGTTAGTTTTAGAAGATGACTCGGATCTCTGGGATGAGATATTTGAAGGTGCTTTTGTTCAGAGGA TGAAAACTATAATCACATCACGATTTGAGGATTTGGTTAGAGGCATCAATTTGGGAGAGTCCATTTGTGCAGTCAGAGAGACTCCTGGTGAACCGATTGA CTTTCAGGCATACTTGAACAGACCTTGCACTGGTGGTGGGGTTTGGTTTATTGAACCCAATGCAAAGAAGTCTGGTCTAGGTTCTGGTCATAAGGTGTCG CCTGAAGAGAATGATTTTCATAGTTGTCTCAATGCGTTCTTTGGTCCTGAAGTTAGTCGTATCAGAGATGCAGTGGACAGTTGTTGTCAAAGTGTTCTCG AGGACCTGCTCAGTTTCTTAGAATCTCCAAAAGCAGCTCTCAGGCTAAATGATTTGGCACCATTTTTACAGGATAAGTGTTATGAGAGCATTTCAACTAT ATTAACAGAACTCAAGAGGGAGCTTGATAGTTTATATGCTACAATGGGGAATGCTAACAATGTTGGTCAGTCGGTTTCTCCTGCCATGGTTGTTGACAAA TCTCTTTACATTGGGAGACTTTTGTTTGCATTTCAAAACCACTCAAAACACATTCCTGTAATACTGGGCTCTCCAAGGTTTTGGGCCGAAGATACTATGG CTGCAGTTTTTGACAAGTTACCATCTGTATTGAGGCAATCTAGAGTTGCTAGTGACTATCCTATCCCTGACAGTCCTGGCAGGCAATTTCCCACTGGATC TAAAAGACAGACCTCATCTGCTGCCTCTGCTTTACTTGGAGCAAATGAAAGTGCAAGTCCTAAACTTGAAGAATTAGGCAGAACCATGAGGGATCTTTGC ATCAGAGCTCATATCTTATGGATATCCTGGTTATCTGATGAGCTTTCAACCATTCTTGCTCTGGATCTTGGAAAAGATGATGGATTATCGGCAACAACTC CCTTGAGGGGCTGGGAAGAGACAGTAGTCAAGCAAGAACAATCTGATGAGAACCAGCCAGAAATTAAAATTTCACTACCATCCATACCTTCACTCTATAT CATCTCATTTCTGTTTCGGGCATGTGAAGAAATCCATAGAATTGGAGGTCATGTTCTGGACAAATCAATTCTGCAAAAATTTGCTTCAAGACTACTGGAG AAGGTTATTGAAATTTATGAGGACTTCCTTTCCTCTAGTGAGTCTCATCAGTCTCAAGTGTCAGAGAAAGGAGTTCTTCAAATTCTGTTAGACCTGAGAT TTGCTGCTGATGTTCTATCTGGGGGTGATTGCAATATTAATGAGGAGATATCTAGAAATCCAAGGGTGAAGATTCCTTTCAGGCGGAAGCAGGAGCAAAG CCATAAGAAGTCGGCCTTTAGAGAGCGTATTGATGGGTTAATTAACTGTTTTTCACAGAGGCTTGATCCCATAGACTGGCTTACGTATGAGCCATACTTG TGGGAGAATGAGAGGCAGTCGTACTTGCGGCATGCTGTCCTTTTGGGGTTCTTTGTGCAACTAAACCGGATGTATATTGATACTATGCAAAAACTACCAT CCAATCCAGAGTCAAATATCATGAGATGTTGTACTGTTCCTCGCTTTAAATACCTTCCAATCAGCACGCCAGCATTGTCTTCAAGAGGGACAACAAAGAC TTCTTTTCAAGCAACTTCAGATGATATCTCTTCTAGAAGTTCCTGGAAAGCTTATACCAATGAAGAGCTTTCTCGAAATATTGATTTGGATGAAAACTCT AGTTTTGGTGTAGCAACACCAATTTTGAAGTCTTTCATGCAGGTTGGAAGCAGGTTTGGAGAGAGCACTTTAAAATTGGGATCTATGTTAACGGATGGGC AAGTAGGCATATTCAAGGACAGATCGGCAGCTGCCATGTCAACATTTGGTGATATTTTACCTGTCCAAGCAGCTGGTCTTCTTTCATCATTCACAGCTAC CAGATCAGACTCTTGA
AA sequence Show only first row Show all	>Potri.008G079700.1 pacid=42805750 polypeptide=Potri.008G079700.1.p locus=Potri.008G079700 ID=Potri.008G079700.1.v4.1 annot-version=v4.1 MRVSTPSATDDRAATLSGGGYRDAESLLRSKTISEIRNVESATRQQIEEKKEELRQLVGNRYRDLIDSADSIVLMKSYCGSISHNIASIHISIRSLSASP LSETPKFTNPSSTRGKIYGIACRVKYLVDTPENIWGCLDEFMFLEAAGRYTRAKHVQNTLMSSDYNKILSNFPLLQHQWQIVESLKVQISQKSRERLSDQ GLGIGGYADALAAAAVIDALEPDQVLGLFLDSRKSWISQKLGGFGWVDVKNDNVSGEVVVFVFCEVLKIIQVSVGQVGELFLQVLNDMPLFYKVILGSPP ASQLFGGIPNPDEEVRLWKLFREKLESVNVALDKEYIARTCLSWLRDCGGEIVSKINGRFLIDAIATGGELAVAEKMIRETMGSKQVLEGSLDWLKSVFG SEIELPWSRIRELVLEDDSDLWDEIFEGAFVQRMKTIITSRFEDLVRGINLGESICAVRETPGEPIDFQAYLNRPCTGGGVWFIEPNAKKSGLGSGHKVS PEENDFHSCLNAFFGPEVSRIRDAVDSCCQSVLEDLLSFLESPKAALRLNDLAPFLQDKCYESISTILTELKRELDSLYATMGNANNVGQSVSPAMVVDK SLYIGRLLFAFQNHSKHIPVILGSPRFWAEDTMAAVFDKLPSVLRQSRVASDYPIPDSPGRQFPTGSKRQTSSAASALLGANESASPKLEELGRTMRDLC IRAHILWISWLSDELSTILALDLGKDDGLSATTPLRGWEETVVKQEQSDENQPEIKISLPSIPSLYIISFLFRACEEIHRIGGHVLDKSILQKFASRLLE KVIEIYEDFLSSSESHQSQVSEKGVLQILLDLRFAADVLSGGDCNINEEISRNPRVKIPFRRKQEQSHKKSAFRERIDGLINCFSQRLDPIDWLTYEPYL WENERQSYLRHAVLLGFFVQLNRMYIDTMQKLPSNPESNIMRCCTVPRFKYLPISTPALSSRGTTKTSFQATSDDISSRSSWKAYTNEELSRNIDLDENS SFGVATPILKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSAAAMSTFGDILPVQAAGLLSSFTATRSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	0	1
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.015G048100 [exp]	1.41	0.8807
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	2.82	0.8672
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.006G145700 [exp]	6.70	0.8701
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	11.13	0.8758
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	11.48	0.8239
AT3G58050			unknown protein		Potri.016G060200 [exp]	15.19	0.7986
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	15.23	0.8269
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	15.49	0.8265
AT1G54920			unknown protein		Potri.013G023600 [exp]	16.49	0.8389
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	16.61	0.8616

Compare expression of checked genes

Potri.008G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.