Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36950 857 / 0 DEGP10 DegP protease 10 (.1) AT1G65630 607 / 0 DEGP3 DegP protease 3 (.1) AT1G65640 510 / 3e-178 DEGP4 DegP protease 4 (.1) AT3G16540 483 / 8e-166 DEGP11 DegP protease 11 (.1) AT3G16550 479 / 3e-165 DEGP12 DEGP protease 12 (.1) AT5G40560 474 / 2e-164 DEGP13 DegP protease 13 (.1) AT5G40200 451 / 7e-153 DEGP9 DegP protease 9 (.1) AT2G47940 399 / 3e-132 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT1G51150 185 / 9e-55 DEGP6 DegP protease 6 (.1) AT5G54745 176 / 1e-51 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073100 [exp] 466 / 6e-159 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.012G077900 [exp] 456 / 3e-155 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.002G207200 [exp] 415 / 3e-138 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.014G135200 [exp] 408 / 1e-135 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.013G018300 [exp] 61 / 1e-09 AT5G27660 516 / 0.0 Trypsin family protein with PDZ domain (.1) Potri.001G348800 [exp] 59 / 6e-09 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 49 / 5e-06 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2) Potri.011G083300 [exp] 49 / 7e-06 AT4G18370 355 / 4e-123 PROTEASE HHOA PRECUSOR, DEGP protease 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024525 [exp] 814 / 0 AT5G36950 764 / 0.0 DegP protease 10 (.1) Lus10008726 [exp] 479 / 7e-167 AT5G36950 443 / 7e-153 DegP protease 10 (.1) Lus10014524 [exp] 443 / 1e-149 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10032163 [exp] 441 / 4e-149 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10008727 [exp] 302 / 1e-99 AT5G36950 286 / 5e-94 DegP protease 10 (.1) Lus10005931 [exp] 208 / 1e-60 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10008781 [exp] 63 / 4e-10 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10040905 [exp] 57 / 2e-09 AT2G47940 110 / 5e-29 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10037815 [exp] 53 / 5e-07 AT5G27660 491 / 9e-173 Trypsin family protein with PDZ domain (.1) Lus10022234 [exp] 50 / 4e-06 AT3G27925 623 / 0.0 DegP protease 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0466 [poplar] [flax] PDZ-like PF13180 [poplar] [flax] PDZ_2 PDZ domain CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.008G079900.2 pacid=42806894 polypeptide=Potri.008G079900.2.p locus=Potri.008G079900 ID=Potri.008G079900.2.v4.1 annot-version=v4.1 ATGTTGTCTTCATCAGGTCGTGCAGTGAGGAAGCTATGCTCCTCTTCTTCTTGCACCGCCGCCTCTGTTATCAGAAACCGTAACTTGTTGCTCAGAGAAA GATACATTTCCCCTCTTGTATCATCAAATTTAGCAAAATATTCGAAAACAACACAACACAGAGCCATTCCTTCCCTTTTCAATAACTTTTCATTATATTC TACAACAGCAGAAGCATCAACCGCAGCAATAACATCAGCCTCAGCAGCAACAGCTAACAATCATTTGGAGGAGGCATCACAACCAAACCTGAGTGATGCA TATTCTGCTATAGAGCTTGCATTAGATTCAGTTGTCAAGATTTTTACTGTTTCAAGTAGCCCCAATTACTTCCTTCCATGGCAAAACAAGTCACAGCGTG AAACCATGGGTTCTGGATTTGTTATTACTGGAAAAAAAATTCTTACAAATGCTCATGTGGTGGCTGATCATACATTTGTACTCGTAAGAAAGCACGGGTC TCCCACCAAATACAGAGCTGAAGTTCAAGCTGTTGGTCATGAATGTGATTTAGCTATTCTAGTTGTTGAAAATGAAGAATTCTGGAAGGGTATGAATTTC TTGGAGCTAGGAGACATCCCATTTCTGCAGGAAGCTGTTGCAGTAGTCGGGTATCCTCAAGGTGGGGACAACATATCTGTTACCAAAGGTGTTGTCTCCA GAGTTGAACCAACACAATATGTACATGGAGCATCCCAGTTAATGGCAATACAGATTGATGCTGCCATAAATCCTGGGAATAGCGGTGGTCCAGCAATAAT GGGAAATAAAGTTGCCGGTGTGGCTTTCCAGAACCTATCAGGTGCTGAAAATATTGGCTATATAATTCCTGTTCCTGTAATCAAGCATTTTATAAATGGT GTGGAAGAAAGTGGAAAATATGTTGGATTCTGCTCTATGGGCCTATCATGCCAACCAACTGAAAATGTTCAACTGAGAAAGCACTTTGGTATGCGCCCTG AAATGACAGGTGTGCTTGTGAGCAAAATTAATCCACTGTCAGATGCACACAGAGTCCTAAAAACAGATGATATTATCCTTGCCTTTGATGGAGTGCCTAT AGCAAACGATGGAACAGTGCCTTTCCGAAACAGAGAGCGGATAACTTTTGATCACTTAGTGTCTATGAAGAAACCCAATGAAACAGCTTCAGTTAGACTT TTGAGGGGTGGTGAAGAGCATGAATTCAGTATCACCCTTAGACCTTTGCAGCCCCTAGTTCCTGTTCATCAATTTGATAAGCTTCCTAGTTATTACATTT TTGCTGGTCTGGTCTTTGTTCCACTAACACAACCATATCTTCATGAGTATGGAGAAGAATGGTATAATACATCACCTCGTCGATTATGTGAACGTGCATT GAAAGAGCTGCCAAAAAAGGCTGACCAACAACTTATCATTCTTTCTCAGGTGCTCATGGACGATATAAATGCTGGGTATGAGCGTCTTGCAGAACTACAG GTTAAGAAAGTCAATGGAGTAGAAATCGACAATTTGAAGCACCTGTGCCAACTTATCAGGGACTGTAGTTCAGAGAGCTTGAGGTTTGATTTAGATGATG ATAGGGTAATTGCGTTGAATTATCAGTCTGCAAAAGTAGCTACTTCCAGAATTTTGAAACGTCACAGGATACCTTCCGCCATGTCCAGCGACCTTAGTGC TGAACAAAATATACCAGAAAGTGAGTCGGCCAGCTCAAGCTGA
AA sequence Show only first row Show all	>Potri.008G079900.2 pacid=42806894 polypeptide=Potri.008G079900.2.p locus=Potri.008G079900 ID=Potri.008G079900.2.v4.1 annot-version=v4.1 MLSSSGRAVRKLCSSSSCTAASVIRNRNLLLRERYISPLVSSNLAKYSKTTQHRAIPSLFNNFSLYSTTAEASTAAITSASAATANNHLEEASQPNLSDA YSAIELALDSVVKIFTVSSSPNYFLPWQNKSQRETMGSGFVITGKKILTNAHVVADHTFVLVRKHGSPTKYRAEVQAVGHECDLAILVVENEEFWKGMNF LELGDIPFLQEAVAVVGYPQGGDNISVTKGVVSRVEPTQYVHGASQLMAIQIDAAINPGNSGGPAIMGNKVAGVAFQNLSGAENIGYIIPVPVIKHFING VEESGKYVGFCSMGLSCQPTENVQLRKHFGMRPEMTGVLVSKINPLSDAHRVLKTDDIILAFDGVPIANDGTVPFRNRERITFDHLVSMKKPNETASVRL LRGGEEHEFSITLRPLQPLVPVHQFDKLPSYYIFAGLVFVPLTQPYLHEYGEEWYNTSPRRLCERALKELPKKADQQLIILSQVLMDDINAGYERLAELQ VKKVNGVEIDNLKHLCQLIRDCSSESLRFDLDDDRVIALNYQSAKVATSRILKRHRIPSAMSSDLSAEQNIPESESASSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36950		DEGP10	DegP protease 10 (.1)		Potri.008G079900 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	1.41	0.8588
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	2.00	0.8257
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	4.47	0.8345
AT5G18440		AtNUFIP	nuclear FMRP-interacting prote...		Potri.010G246500 [exp]	4.47	0.7954
AT3G49990			unknown protein		Potri.005G234800 [exp]	4.89	0.8320
AT1G48920		ATNUC-L1, PARL1	PARALLEL 1, nucleolin like 1 (...		Potri.005G093100 [exp]	5.47	0.8113
AT2G37990			ribosome biogenesis regulatory...		Potri.005G231000 [exp]	6.32	0.8149
AT5G49020		ATPRMT4A	ARABIDOPSIS THALIANA PROTEIN A...		Potri.010G014600 [exp]	7.93	0.7679
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Potri.018G114900 [exp]	8.12	0.7948
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	12.00	0.7968	Pt-SYNC3.1

Compare expression of checked genes

Potri.008G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.