Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HUA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12680 543 / 0 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) AT5G16540 196 / 7e-58 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 186 / 4e-53 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 172 / 5e-48 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G48440 169 / 1e-46 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G04990 148 / 2e-39 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G02830 141 / 4e-37 C3HZnF ZFN1 zinc finger protein 1 (.1) AT3G06410 127 / 8e-32 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G32930 110 / 6e-26 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 110 / 8e-26 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176300 [exp] 809 / 0 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.013G086800 [exp] 203 / 1e-59 AT3G02830 542 / 0.0 zinc finger protein 1 (.1) Potri.019G053200 [exp] 202 / 2e-59 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 168 / 2e-46 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 162 / 4e-44 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.014G159500 [exp] 126 / 2e-31 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 125 / 3e-31 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 122 / 8e-30 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 113 / 7e-27 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020196 [exp] 206 / 8e-61 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 201 / 4e-59 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10007941 [exp] 184 / 3e-52 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 157 / 2e-42 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 154 / 7e-42 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 137 / 5e-35 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 135 / 3e-34 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10015156 [exp] 131 / 3e-33 AT1G04990 299 / 5e-98 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10013476 [exp] 131 / 4e-33 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10031528 [exp] 121 / 6e-31 AT1G04990 204 / 2e-63 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.008G080300.1 pacid=42807932 polypeptide=Potri.008G080300.1.p locus=Potri.008G080300 ID=Potri.008G080300.1.v4.1 annot-version=v4.1 ATGGCCAAACAACTCTACGGCTACGGTGCCCCTGCAACAACATCGGCTTCCCGTTCCCGCACCGACTCCTATCTCACCGACTCGGTCTTGACCCGATACT TAGGCACCGGGTCGGACCCTCTGTCTTCGGATTCTTCGAAGTACTCGGCGAGCTCCTCCATGTATCTAACACAGAGCGATAGCGCACTCAGATACTCGGT CGATAGAGGCATTGCCTCGGCGGCAGCTGCTGCAACTTCTCCGCATTTGTCGTCTTGGCCACCACCACCTGGTGTTGATGCTCCTTCTGCTGTTGATTCG CTTGTTCCTGGCCTTAAACGCACTCCTGAAGTGCTCTATCATCCGACTCTTTTGGGTGCCCATAGCACAATTGGGCAAAGTGAGGATTGGTATTCTACCA ACGCTTTAGCCAAGCGTGCTAGATTCGAGACCACAAGCCATCTTCCTATATATCCACAGAGGCCAGGGGAGAAGGATTGTGCCTACTATATGCTCACTCG AACCTGTAAATTTGGAGATACCTGCAAATTTGACCATCCAGTTTGGGTTCCCGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCCCCTATTGCTACAAGT GAAACTTTTCCTGATAGACCAGGAGTGCCTGATTGTCCTTACTTTCTAAAAACTCAAAGGTGCAAGTATGGTTTGAACTGCAAGTTTAATCATCCAAAAG AAAAGATGTCTTTGGGTGTTTCAGAAAACACCAGTATTTCTGCCTTGCCAGAGAGACCTTCTGAGCCCCCATGTGCATTCTATATGAAGACTGGGATTTG CAAATTTGGTGCAACCTGCAAATTTCATCACCCAAAAGATATCCAAATATCCTTGGCAGGACAAGGGAATGATGATGGTGTGCAAACTAATTCTGTAGTT GATAACGGGGGAATAACTGGAGATGTCAATGTGATTAAGGCCCTTGTGTCAGTTACCCCAGCCCTACTTCATAACTCCAAAGGACTTCCGATGAGACCGG GTGAAGTGGATTGTCCCTTCTATCTGAAAACTGGCAGTTGTAAGTACGGTGCCACTTGCCGCTATAATCATCCTGAGAGGACAGCAATCAATCCACCTGC TGCTGCAATCGGGCATCCAATCATAGCTCCTTCCATGGCAAATCTGAACCTCGGAGTTTTCAGTCCAGCTGCCTCTATATATCAAACTATTGACCCCAGA TTGTCGACGCTGGGAGTGGGACCGACTGTCTATCCTCAACGACCTGGACAGGCAGAATGTGATTTTTACATGAAGACTGGTGAGTGTAAGTTTGGGGAAA CTTGCAAGTTTCATCACCCAATTGATCGTTCTGCACCTACAGCAAAGCAAACTGAACCACAGACTGTTAAGCTCACTCTTGCAGGGTTGCCAAGGAGAGA GGGTGCGGTTCACTGTCCATACTATATGAAGACTGGCACTTGCAAGTATGGTGCAACATGCAAATTTGACCACCCGCCTCCTGGAGAGGTCATGGTGTTT CCAAATCTCAAGGAACTCTTGATGCAGAAGCAATAG
AA sequence Show only first row Show all	>Potri.008G080300.1 pacid=42807932 polypeptide=Potri.008G080300.1.p locus=Potri.008G080300 ID=Potri.008G080300.1.v4.1 annot-version=v4.1 MAKQLYGYGAPATTSASRSRTDSYLTDSVLTRYLGTGSDPLSSDSSKYSASSSMYLTQSDSALRYSVDRGIASAAAAATSPHLSSWPPPPGVDAPSAVDS LVPGLKRTPEVLYHPTLLGAHSTIGQSEDWYSTNALAKRARFETTSHLPIYPQRPGEKDCAYYMLTRTCKFGDTCKFDHPVWVPEGGIPDWKEVPPIATS ETFPDRPGVPDCPYFLKTQRCKYGLNCKFNHPKEKMSLGVSENTSISALPERPSEPPCAFYMKTGICKFGATCKFHHPKDIQISLAGQGNDDGVQTNSVV DNGGITGDVNVIKALVSVTPALLHNSKGLPMRPGEVDCPFYLKTGSCKYGATCRYNHPERTAINPPAAAIGHPIIAPSMANLNLGVFSPAASIYQTIDPR LSTLGVGPTVYPQRPGQAECDFYMKTGECKFGETCKFHHPIDRSAPTAKQTEPQTVKLTLAGLPRREGAVHCPYYMKTGTCKYGATCKFDHPPPGEVMVF PNLKELLMQKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.008G080300 [exp]	0	1	Pt-HUA1.1
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.015G004600 [exp]	1.00	0.7942
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.002G003000 [exp]	4.24	0.7187
AT2G24030			zinc ion binding;nucleic acid ...		Potri.006G182601 [exp]	6.32	0.7611
AT1G13030			sphere organelles protein-rela...		Potri.010G048700 [exp]	8.36	0.6975
AT2G14285			Small nuclear ribonucleoprotei...		Potri.006G167000 [exp]	11.83	0.6756
AT3G58180			ARM repeat superfamily protein...		Potri.005G221700 [exp]	14.86	0.6858
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	15.23	0.7114
AT3G06660			PAPA-1-like family protein / z...		Potri.008G106200 [exp]	16.52	0.6384
					Potri.006G276250 [exp]	17.00	0.6677
AT4G32050			neurochondrin family protein (...		Potri.018G022800 [exp]	20.78	0.6556

Compare expression of checked genes

Potri.008G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.