Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	IDH1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65930 742 / 0 cICDH cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) AT1G54340 740 / 0 ICDH isocitrate dehydrogenase (.1) AT5G14590 691 / 0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT3G09810 45 / 7e-05 IDH-VI isocitrate dehydrogenase VI (.1) AT5G03290 44 / 0.0001 IDH-V isocitrate dehydrogenase V (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176000 [exp] 862 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.004G074900 [exp] 786 / 0 AT1G65930 781 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.017G144541 [exp] 776 / 0 AT1G65930 779 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Potri.001G347800 [exp] 681 / 0 AT5G14590 771 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Potri.006G126700 [exp] 44 / 0.0002 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010431 [exp] 781 / 0 AT1G54340 747 / 0.0 isocitrate dehydrogenase (.1) Lus10012111 [exp] 776 / 0 AT1G54340 746 / 0.0 isocitrate dehydrogenase (.1) Lus10007380 [exp] 723 / 0 AT1G65930 741 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10020798 [exp] 717 / 0 AT1G65930 744 / 0.0 cytosolic NADP+-dependent isocitrate dehydrogenase, cytosolic NADP+-dependent isocitrate dehydrogenase (.1) Lus10022252 [exp] 620 / 0 AT5G14590 714 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10013090 [exp] 507 / 4e-178 AT5G14590 578 / 0.0 Isocitrate/isopropylmalate dehydrogenase family protein (.1) Lus10026519 [exp] 46 / 4e-05 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 45 / 0.0001 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 42 / 0.0008 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 42 / 0.0008 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [poplar] [flax] Iso_DH PF00180 [poplar] [flax] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.008G080500.1 pacid=42806760 polypeptide=Potri.008G080500.1.p locus=Potri.008G080500 ID=Potri.008G080500.1.v4.1 annot-version=v4.1 ATGATCGCAGTGATCACGCAGAAACAGCAAGTGAAAATGGCATTTGATAAAATTAAGGTCACCAATCCCATTGTCGAAATGGACGGAGATGAAATGACTA GAGTTATTTGGAAATCAATTAAGGACAAGCTTATTTTCCCATTTTTGGATTTGGATATCAAGTATTTTGACCTCGGCCTGCCCAATCGTGATGCTACAGA TGATAGAGTTACCATAGAAAGTGCTGAGGCTACTCTCAAATATAATGTAGCAATCAAGTGTGCAACAATAACTCCAGATGAAGGCCGTGTTAAGGAGTTT AACTTGAAAAATATGTGGAAGAGTCCAAATGGGACGATTCGCAACATTTTAAATGGTACAGTTTTTAGAGAACCTATTATCTGCAAAAACATTCCAAGGC TTGTTTCAGGTTGGACCATGCCAATCTGCATAGGAAGGCATGCATTTGGTGACCAGTACCGAGCGACTGATACAGTCATCCAAGGCCCTGGCAAACTGAA GCTGGTATTTGTACCTGATGGACAAAGTGAAAAGACAGAATTTGAGGTTTTCAAATTCAAAGGAGCTGGAGGTGTGGCTCTGTCCATGTATAACACTGAT GAGTCCATCCATGCTTTCGCTGAAGCTTCAATGAACACTGCTTACCTGAAGAAGTGGCCGCTTTATCTTAGCACAAAAAATACCATTCTTAAAAAATATG ATGGAAGATTCAAGGACATATTCCAGGAAGTTTATGAAATGCAATGGAAATCCAAGTTTGAGGCTGCAGGAATTTGGTATGAACATCGTCTCATTGATGA TATGGTTGCTTATGCTCTCAAAAGTGAAGGAGGTTATGTATGGGCATGCAAGAATTATGATGGAGATGTGCAGAGTGATTTCTTGGCCCAAGGATTTGGA TCTCTTGGGTTGATGACTTCAGTATTGGTGTGCCCGGATGGAAAGACAATCGAAGCTGAAGCAGCCCATGGCACGGTTACCCGCCATTATCGGGTTCACC AGAAAGGAGGTGAAACCAGCACCAACAGCATAGCATCGATTTTTGCCTGGTCGAGAGGTCTTGCACACAGGGCAAAGTTGGACGGCAATGTTAGACTATC GGATTTTACTGCAAAACTAGAAGCATCCTGCATTGGAGCTGTTGAATCAGGGAAGATGACCAAGGATCTTGCACTTCTTATTCATGGGCCCAGGGTTAGT AGGGGTCGGTATCTGAATACAGAGGAGTTCATTGATGCTGTAGCTGAGGAGCTGAAGGCAAGACTGTTGGTCAGAGCAAAGTTGTAA
AA sequence Show only first row Show all	>Potri.008G080500.1 pacid=42806760 polypeptide=Potri.008G080500.1.p locus=Potri.008G080500 ID=Potri.008G080500.1.v4.1 annot-version=v4.1 MIAVITQKQQVKMAFDKIKVTNPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDRVTIESAEATLKYNVAIKCATITPDEGRVKEF NLKNMWKSPNGTIRNILNGTVFREPIICKNIPRLVSGWTMPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPDGQSEKTEFEVFKFKGAGGVALSMYNTD ESIHAFAEASMNTAYLKKWPLYLSTKNTILKKYDGRFKDIFQEVYEMQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFG SLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNVRLSDFTAKLEASCIGAVESGKMTKDLALLIHGPRVS RGRYLNTEEFIDAVAEELKARLLVRAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.008G080500 [exp]	0	1	IDH1.3
AT5G09260		VPS20.2	vacuolar protein sorting-assoc...		Potri.007G101500 [exp]	13.00	0.7628	Pt-ATHDH.3
AT4G10050			esterase/lipase/thioesterase f...		Potri.019G072900 [exp]	39.94	0.6912
AT3G59490			unknown protein		Potri.017G028900 [exp]	89.00	0.6966
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Potri.002G090500 [exp]	97.21	0.6187
AT1G74320			Protein kinase superfamily pro...		Potri.003G193000 [exp]	98.63	0.6318
AT5G20520		WAV2	WAVY GROWTH 2, alpha/beta-Hydr...		Potri.006G145200 [exp]	102.36	0.6391
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	128.68	0.6715
AT5G25265			unknown protein		Potri.006G258800 [exp]	135.30	0.6329
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Potri.018G069450 [exp]	145.55	0.6299
					Potri.009G086900 [exp]	166.06	0.6214

Compare expression of checked genes

Potri.008G080500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.