Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79250 684 / 0 AGC1.7 AGC kinase 1.7 (.1.2) AT3G12690 676 / 0 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G16440 634 / 0 RSH3 root hair specific 3 (.1) AT5G47750 567 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT5G55910 547 / 0 D6PK D6 protein kinase (.1) AT4G26610 547 / 0 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT2G44830 537 / 0 Protein kinase superfamily protein (.1) AT5G40030 528 / 0 Protein kinase superfamily protein (.1) AT3G27580 513 / 6e-177 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G03640 488 / 1e-162 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175900 [exp] 1066 / 0 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.016G004900 [exp] 577 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 576 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 563 / 0 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 560 / 0 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 546 / 0 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.017G075400 [exp] 546 / 0 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 507 / 1e-169 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.004G186300 [exp] 483 / 1e-161 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001840 [exp] 665 / 0 AT1G79250 657 / 0.0 AGC kinase 1.7 (.1.2) Lus10042911 [exp] 560 / 0 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10016629 [exp] 556 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 555 / 0 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 555 / 0 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 523 / 4e-180 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10032185 [exp] 520 / 6e-180 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 518 / 2e-179 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1) Lus10022534 [exp] 504 / 1e-173 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10020571 [exp] 476 / 2e-160 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.008G080600.2 pacid=42806628 polypeptide=Potri.008G080600.2.p locus=Potri.008G080600 ID=Potri.008G080600.2.v4.1 annot-version=v4.1 ATGTCATCTAAGCCTGCCAAAGGCCCTGACTCATCCGAGATGAGCATACCACCAGAAGAAGCAGAAAGTGAAACCAAAAAGGTGGAGGGGTTTAGCAAGA GTATCGATGCCAATATAATCTGTAACAATCCTCTGTACCAAGAACCCAAGAAAAAGGATCCAATAGGAAAATATAGTGCAAACTCAGGTTATGGTTCACC AAGGAAAACTGGATTTACCAAGATAACTGAAAATGTAAATTTTAATCGTCACTTGGATCCCAAAAAGATGGATCCATTAAGCAGGCCTGTGGGAAATGCT AGTTCTAATCAACGTGCCCTTCCAAGCACTAGAACATCTCCAAAATCTCAACTTTCAACTACTTCAGCAGCAGCAGGAGCAACAACAACAGCTGCATTGC CAGCAAACATGAAGGCAAATGAAGCAAAGACTTTTAGTTCCATTACCAACCATGCCAATTTGAGTGGCAGAAGCTCTACTCGTGCCAACAGTTTAGAGAG CTCCGGTGGTGCCAACAAGCCCCACACAGGGGGTGATGTCAGATGGGACGCCATTCAGTTGGCCACTGCCAGAGGTACAATCGGCCTTAGCAACTTTAGG CTTCTCAAGCGCCTTGGATATGGTGACATTGGTAGTGTCTATCTTGTTGAACTTAGAGGGACTAATGCCCATTTTGCTATGAAAGTAATGGATAAGGCTT CTCTTGCAAGTAGAAACAAGATATTAAGAGCGCAGACAGAGAGGGAGATTCTTGGACTTCTTGACCACCCATTCTTGCCCACTTTATATAATTATTTCGA AACTGACAAGTTTTACTGCATCGTCATGGAATTCTGCAGTGGAGGCAATCTTCATTCTCTTCGGCAGAAGCAGCCTAACAAGCATTTTACTGAGGAAGCA GCACGATTTTATGCATCAGAGGTGTTGTTGGCACTTGAATATCTGCACATGTTAGGCATAGTATACAGAGATTTGAAGCCAGAAAATGTTCTAGTAAGAC ATGAGGGGCATATCATGCTCTCAGACTTTGATTTGTCGCTTCGTTGCTCGGTGAGTCCAACCCTTGTCAAGTCTTCATCTTTGCATGCAAGCAACAATGG CAGCGGCGGTTTAGGCATTTTGGAGGATGAATCTGTAGTGCAGGGTTGTATCCAACCGTCAACATTTTTCCCACGCATATTACCAGGTAAAAAGAGCCGA AAATCCAAATCAGACTATGGACTCTTTGTTGGAGGGTCAATGCCAGAATTAATGGCAGAGCCGACAAACGTTCGTTCGATGTCATTTGTTGGCACACACG AGTACTTAGCCCCAGAGATCATTCGCGGAGAAGGTCATGGCAGTGCAGTGGACTGGTGGACTTTCGGCGTGTTCTTATATGAACTATTGCATGGAACAAC ACCCTTCAAAGGACAAGGAAATAGAGCTACATTATTCAATGTTGTTGGGCAGCCATTGAAATTCCCAGAAAATCCACAGGTCAGTATGGTGGCTCGTGAT CTGATAAGAGGACTTCTAGTTAAAGAACCCCATAAAAGAATTGCATACAAAAGGGGAGCCACAGAGATAAAACAGCATCCATTTTTTGAAGGAATGAACT GGGCTCTAGTCAGAAGTGCCCTGCCTCCACACGTACCTGAACCTGTAGACTTCTCACAATATGCTAGCAAAGAAGCCCCCCCAGCTGACAAGAAAACGCC AGATATTGGAGGTGATAAAAAAGATGGCAGTTCTCCTGAAAACAAGGATGAATCTTATGTAGAGTTTGAATACTTTTAG
AA sequence Show only first row Show all	>Potri.008G080600.2 pacid=42806628 polypeptide=Potri.008G080600.2.p locus=Potri.008G080600 ID=Potri.008G080600.2.v4.1 annot-version=v4.1 MSSKPAKGPDSSEMSIPPEEAESETKKVEGFSKSIDANIICNNPLYQEPKKKDPIGKYSANSGYGSPRKTGFTKITENVNFNRHLDPKKMDPLSRPVGNA SSNQRALPSTRTSPKSQLSTTSAAAGATTTAALPANMKANEAKTFSSITNHANLSGRSSTRANSLESSGGANKPHTGGDVRWDAIQLATARGTIGLSNFR LLKRLGYGDIGSVYLVELRGTNAHFAMKVMDKASLASRNKILRAQTEREILGLLDHPFLPTLYNYFETDKFYCIVMEFCSGGNLHSLRQKQPNKHFTEEA ARFYASEVLLALEYLHMLGIVYRDLKPENVLVRHEGHIMLSDFDLSLRCSVSPTLVKSSSLHASNNGSGGLGILEDESVVQGCIQPSTFFPRILPGKKSR KSKSDYGLFVGGSMPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGVFLYELLHGTTPFKGQGNRATLFNVVGQPLKFPENPQVSMVARD LIRGLLVKEPHKRIAYKRGATEIKQHPFFEGMNWALVRSALPPHVPEPVDFSQYASKEAPPADKKTPDIGGDKKDGSSPENKDESYVEFEYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79250		AGC1.7	AGC kinase 1.7 (.1.2)		Potri.008G080600 [exp]	0	1
AT5G05800			unknown protein		Potri.010G190650 [exp]	132.21	0.7351
AT1G76820			eukaryotic translation initiat...		Potri.011G132300 [exp]	180.60	0.7122

Compare expression of checked genes

Potri.008G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.