Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79270 423 / 3e-142 ECT8 evolutionarily conserved C-terminal region 8 (.1) AT3G17330 311 / 4e-98 ECT6 evolutionarily conserved C-terminal region 6 (.1.2) AT3G13460 299 / 7e-93 ECT2 evolutionarily conserved C-terminal region 2 (.1.2.3.4) AT3G13060 296 / 8e-92 ECT5 evolutionarily conserved C-terminal region 5 (.1.2) AT1G48110 293 / 1e-90 ECT7 evolutionarily conserved C-terminal region 7 (.1.2) AT1G55500 290 / 1e-90 ECT4 evolutionarily conserved C-terminal region 4 (.1.2.3) AT5G61020 281 / 7e-88 ECT3 evolutionarily conserved C-terminal region 3 (.1.2) AT1G09810 277 / 2e-86 ECT11 evolutionarily conserved C-terminal region 11 (.1) AT3G03950 261 / 5e-81 ECT1 evolutionarily conserved C-terminal region 1 (.1.2.3) AT5G58190 256 / 7e-78 ECT10 evolutionarily conserved C-terminal region 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175500 [exp] 977 / 0 AT1G79270 418 / 2e-140 evolutionarily conserved C-terminal region 8 (.1) Potri.003G008400 [exp] 358 / 3e-116 AT1G09810 346 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Potri.004G223800 [exp] 347 / 6e-112 AT1G09810 352 / 2e-115 evolutionarily conserved C-terminal region 11 (.1) Potri.010G152300 [exp] 337 / 3e-106 AT1G48110 572 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.008G100200 [exp] 316 / 2e-98 AT1G48110 535 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Potri.014G001000 [exp] 309 / 1e-96 AT3G13060 756 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.007G002800 [exp] 306 / 3e-95 AT3G13060 732 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Potri.006G079900 [exp] 301 / 1e-93 AT5G58190 420 / 1e-140 evolutionarily conserved C-terminal region 10 (.1.2) Potri.019G034300 [exp] 290 / 2e-90 AT3G13460 412 / 9e-137 evolutionarily conserved C-terminal region 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037365 [exp] 337 / 2e-108 AT1G09810 323 / 7e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10037364 [exp] 330 / 1e-105 AT1G09810 345 / 3e-113 evolutionarily conserved C-terminal region 11 (.1) Lus10017111 [exp] 330 / 8e-104 AT1G48110 597 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10035790 [exp] 338 / 2e-103 AT1G09810 338 / 6e-105 evolutionarily conserved C-terminal region 11 (.1) Lus10018343 [exp] 326 / 7e-103 AT1G48110 592 / 0.0 evolutionarily conserved C-terminal region 7 (.1.2) Lus10034792 [exp] 296 / 9e-92 AT3G13060 646 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10033335 [exp] 296 / 2e-91 AT3G13060 653 / 0.0 evolutionarily conserved C-terminal region 5 (.1.2) Lus10002624 [exp] 284 / 8e-88 AT3G13460 449 / 8e-151 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10020269 [exp] 283 / 3e-86 AT3G13460 443 / 8e-147 evolutionarily conserved C-terminal region 2 (.1.2.3.4) Lus10027582 [exp] 280 / 5e-86 AT5G58190 417 / 6e-140 evolutionarily conserved C-terminal region 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [poplar] [flax] PUA PF04146 [poplar] [flax] YTH YT521-B-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G080800.1 pacid=42808710 polypeptide=Potri.008G080800.1.p locus=Potri.008G080800 ID=Potri.008G080800.1.v4.1 annot-version=v4.1 ATGGCTGCTCATTCTCAAAAACAACAACAGCAATCTCGTAAACCTACTGAAGAAATGACGAGGAATCTTAAGGTGGATCCTTCTCTGGAATTCTCCGATT CCAATACGGTCCCTTCAAACGATGGGAGCCCATCAGATGCAACATCGTGTATATCGTCGGCAGGAGATGCAACGGGAAGTGTCAAAGAAGGTGGTGATAT GGATCAAGAGTCCATGACGACGGATCAGACCTTCATGATGTATCCTGCGGGGAGCTACTATGGATATTACTATCCAGGTTATGATGCTACTTTTGGAGGA GGGTCTAATGATCAACTATACTACGCTGCTGGCGATGGAACCGAACTTCAATACACTGCTACGCAAGCAGATAATGGGTCTTTGATCTACTTCATGCCAG GAATACACCCTGCTTACAGCCCTTATGTGCCCGTGAGCATGATTGGTGTCGATGGGCAATTTATTGCTCAACCACCATATTCACCAACCTCCGTGTTCCA ACCATCCATTCCTTCCCCTGGATACATTCCAAATCCTGTTCCCTATGGAGAGTATTTGCCATACCTATGGGATCCGTCAGTTTTTGCTGGGGATGGAACA TATGGGAATGGCTATAGTGGAATTCTGGAAATTCCTAGCTCTAAACCAAACATGTCTTCACCTAGTCAAGCTCGTGGTCCTCCAAAAAAGGCACTGCCTT CTGACTTGAGTAAATCGTTGGAAACTAAGAACTCCCTTCCAACATTGGATGTCTCATCTGGTCATGGCATGAGCAACCAGTTAAAATCAGTGGGCAAGGC TTCACAGCATGCCTCTCCATTCCCGTCAGATGTAATGGGCAAAGGGTATTTTCCATTTGCAAAGTTTCCACCTTATAATCCAGGGAAGGGGGCAATGCTC TATCCGAATAGCACTACTAAAGTAAATGCAAGGGGTTGGGGAGGCAGTGAAAAGCCAAAAACAAGAAGCAAGACTAATGGCATCGATGATGCATTGCCTA ATGAACAGAATTATGGTCCCAGGACAACCAATGCAAAAGGTTCTGTGGTATGTGGAGGTAATGCTGCTGGATCTTTGGCTCCTGATGGGAACGGAAACAG TAACAGCATAGCTTCAGTTATTAGCAGGGATCAATATAACCTTCCTGACTTTCCAACCAAATACAATCATGCATTTTTCTTTGTTATCAAATCTTACAGT GAAGATGACATTCACAAAAGCATCAAATACAATGTGTGGGCCAGTACTCCTAATGGAAATAAGAGACTGGATAGCGCATATCAAGATGCACAGCAGAAGA TAGCAGAGAAAGGCAACAGTTGTCCCGTGTTTCTTTTCTTTTCGGTTAATGCAAGCGGTCAGTTCTGTGGAGTTGCAGAGATGGTTGGCCGTGTTGATTT CAATAAAAACATGGATTTCTGGCAACAGGACAAGTGGAATGGTTATTTCCCAGTCAAGTGGCATATCATTAAAGATGTTCCAAACCCACAGCTACGGCAT ATAATACTTGAGAATAATGAGAACAAGCCTGTAATTAATAGCAGAGACACACAGGAAGTTAAATTTCCTCAAGGGATTGAAATTCTGAACATATTCAAAA ACTATGTTACAAAGACATCAATATTGGATGACTTCGATTTTTATGAGAGTCGCCAGAAGGTGATGCAAGAGAAAAGACCAAGGCCATTCATACCCCATTC TGATCACAAACAGCAGAAAACAGATGATTTGATTCCTGGTTTTCAGTCGATGGATATATCTGCTACAAAAAACATGGTCTATACCCAGGTTGGAGACAAC ACGAAAGAATGA
AA sequence Show only first row Show all	>Potri.008G080800.1 pacid=42808710 polypeptide=Potri.008G080800.1.p locus=Potri.008G080800 ID=Potri.008G080800.1.v4.1 annot-version=v4.1 MAAHSQKQQQQSRKPTEEMTRNLKVDPSLEFSDSNTVPSNDGSPSDATSCISSAGDATGSVKEGGDMDQESMTTDQTFMMYPAGSYYGYYYPGYDATFGG GSNDQLYYAAGDGTELQYTATQADNGSLIYFMPGIHPAYSPYVPVSMIGVDGQFIAQPPYSPTSVFQPSIPSPGYIPNPVPYGEYLPYLWDPSVFAGDGT YGNGYSGILEIPSSKPNMSSPSQARGPPKKALPSDLSKSLETKNSLPTLDVSSGHGMSNQLKSVGKASQHASPFPSDVMGKGYFPFAKFPPYNPGKGAML YPNSTTKVNARGWGGSEKPKTRSKTNGIDDALPNEQNYGPRTTNAKGSVVCGGNAAGSLAPDGNGNSNSIASVISRDQYNLPDFPTKYNHAFFFVIKSYS EDDIHKSIKYNVWASTPNGNKRLDSAYQDAQQKIAEKGNSCPVFLFFSVNASGQFCGVAEMVGRVDFNKNMDFWQQDKWNGYFPVKWHIIKDVPNPQLRH IILENNENKPVINSRDTQEVKFPQGIEILNIFKNYVTKTSILDDFDFYESRQKVMQEKRPRPFIPHSDHKQQKTDDLIPGFQSMDISATKNMVYTQVGDN TKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.008G080800 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.007G125900 [exp]	8.36	0.8858
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	8.94	0.8855
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	14.49	0.8815
					Potri.005G205000 [exp]	21.35	0.8678
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	23.15	0.8736
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	26.49	0.8730
AT1G54740			Protein of unknown function (D...		Potri.005G037600 [exp]	27.05	0.8799
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.007G003100 [exp]	32.44	0.8657
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074800 [exp]	33.76	0.8782
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	34.46	0.8768

Compare expression of checked genes

Potri.008G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.