Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79280 1751 / 0 AtTPR, NUA TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009940 [exp] 1620 / 0 AT1G79280 1528 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3) Lus10030142 [exp] 1548 / 0 AT1G79280 1484 / 0.0 TRANSLOCATED PROMOTER REGION, nuclear pore anchor (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G080900.3 pacid=42807270 polypeptide=Potri.008G080900.3.p locus=Potri.008G080900 ID=Potri.008G080900.3.v4.1 annot-version=v4.1 ATGCACATCTTCATCACCGACGATGACCTCGCTCGGCACTCAAACGACGCGTCGTATGTGGCCGCGAAGGCCGACGAGTTCATCAGAGGATTGCAGAGCG AACTCGAAAACGTGAGGGCTGCGGCCGATGCGGCGTCGATCACCGCGGAACAAACCTGTTCGCTTCTCGAACAGAAGTTCTTGGCTCTTTCTACCGAATT CTCGAAGCTCGAGTCTCAAAACGCACAGCTTCAGTCCTCTCTCGATGATCGCCTCTCAGAACTTGCTCAGGCACAGGCACAGAAGCATCAGCTTCACTTG CAATCTATTGGAAAGGATGGGGAGATAGAAAGGTTGACGATGGAGGTTTCGGAATTGCACAAGTCGAAGAGGCAGTTGATTGAGTTAGTGGAGCAGAAGG ATTTGGAGATTAGTGAGAAGAATGCTACTTTCAATGGTTATCTTGACAAGATTGTCAATTTGACTGATAGAGCAGCAAATAGGGAGGCTCGAATAAGCGA ACTTGAGGCAGAGTTGGCCCGTTCTCAGGCTACTTGTACTCGTCTTTTGCAGGAGAAAGAACTTATTGAGAGGCATAATGCATGGCTAAATGATGAATTG ACTGCCAAAGTTGACACTCTCATGGAGTTACGCCGAAGGCATGCTGATCTTGAGGAGGATGTATCTACCAAGCTTGCAGATGCAGAGAGACGGTTCAATG AAAGCTCTAGTTCATCGAAGAGGAGCATGGAAAGGGTGAAGGAGTTAGAACTGAAATTGACATCCGTGCAGGAGGAATTATGCTCCTCTAGAGATGCTGC TGCAGCCAATGAAGAGCGATTGTCTGCTGAACTCTCAACTGTAAATAAGCTTGTTGAATTGTACAAAGAAAGCTCTGAGGAATGGTCTCAAAAGGCAGGA GAGCTCGAGGGTGTGATCAAAGCTCTAGAAACACATTTGAGTCAAGTTGAAAATGACTACAAAGAGAGATTGGAGAAGGAAATATCTGCTCGAAAACAAT TAGAGAAGGAGGCGGGGGATTTGAAAGACAAACTTGAAAGGTGCGAAGCTGATATTGAAAGTAGCAGGAAAACTAATGAACTGAGTCTTCTTCCTCTCAA CAGTTACACTACAGAAAGATGGATGGATCCGCTCAATAATGATGATCTTGCTGATGGTAACAGCATGGTTGTCTCCAAGATCCCAGTTGGTGTTTCAGGA ACTGCATTAGCAGCTTCTCTGCTCCGTGATGGTTGGAGTCTGGCTAAAATGTATGCAAAGTACCAAGAAGCGGTTGATGCTCTTCGCCATGAGCAATTGG GAAGGAAGGAATCAGAGGCAGTACTGCAACGGGTTTTGTGTGAACTAGAGGAGAAAGCAGGTGTAATTTTGGATGAAAGAGTTGAATATGAGAGAATGGT AGAATCATACTCTGTCATCAACCAAAAATTGCAGCACTCATTTTCTGAACAGGCAAACCTAGAGAAAACAATCCAAGAATTAAAGGCAGATTTGAGGAGG CATGAACGTGGTTACAGTTTTGCTCAAAAGGAAATTGTTGATCTTCAGAAACAGGTGACAGTTCTTCTAAAGGAATGTCGTGATATACAACTTCGGTGTG GATCTTCTGGGCATGACCAAGTTGATAATAGCAAAGCAATTGCTCCTGTCGGAATGGGCGTAGAGTCTGATCCTGAAAATGCAATCTTGGAACGCCTTAC CTTCAAGGATATAAATGGGTTAGTTGAGCAGAATGTTCAGCTCAGGAGCCTTGTGCGTAATCTTTCAGATCAGATTGAAGATAGGGAGACGGTGTTCAAG GAGAAAATTGAAATGGAACTCAAAAAACACACTGATGAAGCTGCCTCCAAAGTTGCTGCTGTGTTACAAAGAGCTGAAGAGCAGGGTCACATGATTGAAT CACTCCACACTTCTGTTGCAATGTACAAAAGGTTGTATGAAGAGGAACACAAGCTTCGCTCATCTTATTCCCGCTCTTCAGATGCAGCTCCAGTTGAAGA GGATGGAAGAAGGAACCGTTTACTTCTGCTTGAAGATTCTCAGGAAGCTACTAAGAAGGCCCAGGAAAAGGCTGCTGAGCGATTAAGATCTCTTGAGGAA GATTTGGCGAAATCTAAGAGTGATATTATATTACTACGATCAGAACGTGACAAGATGGCTCTGGATGCTAAATTCGCTAGAGAAAGACTTGATAGTTATA TGAAAGAATTTGAACATCAGAGAAATGAAATGAATGGTGTTTTATCAAGAAATGTGGAGTTTTCACAGTTGATAGTTGACCATCAAAGAAAGTTGCGTGA AAGTTCAGAAAATTTGGTTGCATCTGAGGAACTTTCTCGGAAGTTAAATATGGAGGTGTCTGTTCTAAAGCTTGAAAAGGAGATTTTGTCAAATGCTGAA AAGAGAGCATGTGATGAAGTTCGTAGTTTGTCGGAGAGGGTTTATCGCCTTCAGGCTACTTTGGACACTATTCAGAGTGCCGAGGAGGCTCGTGAGGAAG CAAGAGCTGCTGAGAAGAGGAAACAAGAGGAGTATGTAAAAAAAATTGAGAGGGAATGGACTGAGGCCAAGAAAGAGCTGCAACAGGAGCGGGACAATGT TAGAGCTCTCACATCTGACCGTGAACAGACGTTGAAGAATGCCATGAGGCAAATTGATGACATGGGGAAGGAATTGGCTAATACGTTGCATGCTGTTTCT GCTGCTGAAACTAGGGCTGCTGTTGCTGAGACCAAACTCTCCGAGCTGGAGAAGAAGATGAAAGTTTCGGATGCTAAGACTGCCAGTATGAATGACAGTG GCATATCTTCTTCTATTTCGGCTACTGAGGTTGTTACGGATTTGCTTATGGCAAAGGACGAGATACAAAAATTAAAAGAGGAAGCTCGGGCTAGCAAGGA GCACATGCTACAGTATAAGAGTATAGCACAGGTGAATGAAACTGCTCTAAAGCAAATGGAAGATGCCCATGAAAACTTCAAGAAAGAGTCAGAGAAGTTA AAGGAATCACTAGAAAATGAACTTCTTTCTCTGCGGGGGAGGATCTCAGAACTCGACAGCGAATTTAGTAAGAAGTCTGAAGAGGTGGCCTCTGCGGCTG TAGGAAAAGCTGAGGCTTTTGCTTCTGCTTTGGCAGAAATTACCTGTTTGAAGGAAGAAAACTGTAGTAAAACCTCTCAAATTGTAGCGTTGGAATCTCA AATTTCTGCTTTGAAAGAGGATTTGGAAAAGGAGCATGAACGTTGGCGTGCTGCTCAAGCCAATTATGAAAGACAGGTTATTCTACAATCTGAGACAATT CAGGAGTTGACAAAGACATCACAAGCTTTATCCTTGCTACAACAAGAAGCATCTGACCTTCGTAAATTGGTGGATGCACAGAAAAGTGCAAATGACGAGC TTAAGTCTAAGTGGGAGGTAGAGAAATCAATGATTGAAGAATCAAAAAATCAAGCAAAGAAGAAATATGATGAACTGAACGAACAGAACAAATTGCTGCA TAGCCGGCTTGAGGCTATTCACATTCAATTGGCTGAGAAGGATCGAAATGCTGCTGGAATTTCTTCTGGAAGCAATGCTCCAGGATTAGGCAGCGATGCT GGGTTGCAGAATGTGGTTAACTATCTTCGAAGGTCAAAGGAAATAGCAGAAACAGAGATTTCTTTGCTAAAACAGGAAAAGCTTCGACTGCAATCACAAC TTGATGGTGCTCTGAAGGCTGCAGAAACTGCCCAGGCTTCCCTTCATACTGAGCGTGCAAATTCAAGGACATTATTGTTCTCAGAGGAAGAGATAAAATC CCTTCAACTTCAGGTTAGAGAATTGACCTTGCTTCGTGAAAGCAACATGCAATTGAGAGAGGAAAACAAGCACAACTTTGAGGAATGCCAGAAATTGCGT GAAGTAGCACAAAATACTAAAGCACAGTCTGACAAGCTAGAATCTCTATTGAGGGAGAGGCAAATTGAGGTTGAAGCTTGTAAGAAGGAAATTGAAATGG ACAAGGTGGAGAAAGATCACTTGGAAAAGAGAATGTCCGAGCTACTTGAGAGATGTAGAAATATTGACGTGGAAGATTACAATAGGATGAAGGATGATCT TAGACAGATGGAGGAAAAATTGAGAGAGAAGGATGCTGAGATGGAGGGAATTAAGAATCTTGTATCCGAACAGCAGGAAAAAATACTGAAATTGGAGCAA GACCTTGCCAAGAGTGAATCAGAATTGAACCAAAGAGAGAGAAGGATAAGTGACATTTTGCAAACAGAGGCTAGTCTCAGATCTGAGCTGGAGAAGCAGA AGAAGCTGTCTGTTCAGTGGAAGAAAAAATCTGAAATCTTATCAAAGGAGAAGGAAGAATTTAGCAAAGAAAAACAAGCACTCATCAAACAGATTGAGGA CTTGAAACAAGGTAAAAGATTGCTGGGAAATGTTACTGGCGAGCAGGTCTTGAAGGAAAAGGAGGAAAAAGAACACAGAATACAGATTCTGGAGAAAACT GTCGAGAGGCTAAGAGAGGAGTTGAAAAGGGAGAGAGAGGATCTTCGGACCGAGAAATCAAAGCGTCAGATTACAGAGAAGGCTGTTTTAGATTCCTACA AAAATGTTGAGCAGACGAAGACAAAGTTGGAGGATAAACTTGAGTTGCATAAGCAGGTTCTGAAGCGCATATCAGATGAACTGGAAAAGCTTAAGCATGC AGAAGGCAATCTTCCAGAGGGCACCTCTGTGGTTCAGCTTCTTTCTGGGACCATCTTGGATGATCTAGCTGCCACCTATGTATCAGCTATCGAGAACTTT GAAAGGGTAGCACTTTCTGTTTCCTCTGAACTTGGAGCTGGTGTCCAATCAGTGGAGAATCCTTTGATTCCAGATGCTTCTGCCACTGTTACTCCTGGTC AGGCAGTTCCTTCTCAGGCTACCATCGTTTCCCCAGTAGCTCCTCATGCTCACTTACCTACTAAAATGGCCGAAGAGAAGGAGAGAAAAGTTCCTGTACC CAAACCCAATGTTGAAACTCGTAAGGCAGGGAGGAAGCTGGTAAGACCCCGGCTTGTTAGACCTGAAGAGCCTCCAAGCGATGTTGAGATGTCAGAGGTG GATGGATCTACTAGTGTGGCAAAGCTTACACCCGCTAGCGAGTCTGAAACTCAACACAATATCACACTATTTTCTCAGCCAATAGCCCGCAAGCGCCTTG CTTCATCTAGTTCTGACTTGAACGAGCAGCCCCTTAATCAAGGAGAGACTAGCTCTGATGTTCCACCACCTGTTTTGAAGAGGCCAAAAGGTACTGATTC CGTGCAAGAAGGTAGTGAAGGACAAGCTGCCACTCCATCAGAGACTCTGGTGACACTTCCGGCGGTGGAAGAATCAGCTGTCGCTGATTTGTCTCAAGGT GAAGAGGAAGCTGTTGCAGAAAAGGAAGAGGTTGAGACTTCCGGAGAGAAAGCAGAACCTCCAAAAGAATCTGAACAATTAGATGACACAACTCAAGTTG AACCAGAGAATGAGACAAATGAAGTTGCTGAAGAGATTTTGGATAAACCAAGTGAAAGTGGAATGGAAATTTATGATGGTTCAAAGGATCATGCTACTGC AGAAGACAACCAACAATTACCTGTGGAGTTTGAAAATGAGAGGGAAGAGGGGGAACTAGTTGCAGAAGTCGAGGAAGGCGCTGATATGTCAAACATGGCA GGGAGCCCGGAAACTGGGGAAGTTCTTCCTGACACTACTCCTGTGGCTTCACCAGCTAGGATTGATGATGAAGCTATGGTTCCTGTGGGAATGGAGTCAG GTGAGATTAATTCTCCTGAGATGATCACTGATGAGAAGAATGACGAGGGTGATATAGTTGAAGAAATTGGTGAAGGTTCCGACAAGTCAAATGATGGTGG TGACCAGATAGCTGTGGAGACTGATCAGAGTCCTGAGGCTGCTTCAGTCGCTGGAGAGAGAACAACAGCTACTGCCAATACAGAAATGGATGCATCAAAA CAAGCTAGTTCCAGTGGAGCAGAGGCAGAAGAGGTTAGACAGGTATCACCTGCAAGTAACACCTCTACTGTTGTGAATTTAGCAGAGCGAGCTAGGCAGA GGGCAATGCTGAGACAGGGTGGAGGTGGAGCTCCTGCAGTACTTTCTCCTCCAAGCGGTAGAGGCCGTGGAAGAGTTCTACGTGGTCGAATAGCACGTGG TGCACGTGGTGGGCGTGGTGGGCGAAGTGGACGTGGACAAACTCCCGGTCAACAGGGTTAA
AA sequence Show only first row Show all	>Potri.008G080900.3 pacid=42807270 polypeptide=Potri.008G080900.3.p locus=Potri.008G080900 ID=Potri.008G080900.3.v4.1 annot-version=v4.1 MHIFITDDDLARHSNDASYVAAKADEFIRGLQSELENVRAAADAASITAEQTCSLLEQKFLALSTEFSKLESQNAQLQSSLDDRLSELAQAQAQKHQLHL QSIGKDGEIERLTMEVSELHKSKRQLIELVEQKDLEISEKNATFNGYLDKIVNLTDRAANREARISELEAELARSQATCTRLLQEKELIERHNAWLNDEL TAKVDTLMELRRRHADLEEDVSTKLADAERRFNESSSSSKRSMERVKELELKLTSVQEELCSSRDAAAANEERLSAELSTVNKLVELYKESSEEWSQKAG ELEGVIKALETHLSQVENDYKERLEKEISARKQLEKEAGDLKDKLERCEADIESSRKTNELSLLPLNSYTTERWMDPLNNDDLADGNSMVVSKIPVGVSG TALAASLLRDGWSLAKMYAKYQEAVDALRHEQLGRKESEAVLQRVLCELEEKAGVILDERVEYERMVESYSVINQKLQHSFSEQANLEKTIQELKADLRR HERGYSFAQKEIVDLQKQVTVLLKECRDIQLRCGSSGHDQVDNSKAIAPVGMGVESDPENAILERLTFKDINGLVEQNVQLRSLVRNLSDQIEDRETVFK EKIEMELKKHTDEAASKVAAVLQRAEEQGHMIESLHTSVAMYKRLYEEEHKLRSSYSRSSDAAPVEEDGRRNRLLLLEDSQEATKKAQEKAAERLRSLEE DLAKSKSDIILLRSERDKMALDAKFARERLDSYMKEFEHQRNEMNGVLSRNVEFSQLIVDHQRKLRESSENLVASEELSRKLNMEVSVLKLEKEILSNAE KRACDEVRSLSERVYRLQATLDTIQSAEEAREEARAAEKRKQEEYVKKIEREWTEAKKELQQERDNVRALTSDREQTLKNAMRQIDDMGKELANTLHAVS AAETRAAVAETKLSELEKKMKVSDAKTASMNDSGISSSISATEVVTDLLMAKDEIQKLKEEARASKEHMLQYKSIAQVNETALKQMEDAHENFKKESEKL KESLENELLSLRGRISELDSEFSKKSEEVASAAVGKAEAFASALAEITCLKEENCSKTSQIVALESQISALKEDLEKEHERWRAAQANYERQVILQSETI QELTKTSQALSLLQQEASDLRKLVDAQKSANDELKSKWEVEKSMIEESKNQAKKKYDELNEQNKLLHSRLEAIHIQLAEKDRNAAGISSGSNAPGLGSDA GLQNVVNYLRRSKEIAETEISLLKQEKLRLQSQLDGALKAAETAQASLHTERANSRTLLFSEEEIKSLQLQVRELTLLRESNMQLREENKHNFEECQKLR EVAQNTKAQSDKLESLLRERQIEVEACKKEIEMDKVEKDHLEKRMSELLERCRNIDVEDYNRMKDDLRQMEEKLREKDAEMEGIKNLVSEQQEKILKLEQ DLAKSESELNQRERRISDILQTEASLRSELEKQKKLSVQWKKKSEILSKEKEEFSKEKQALIKQIEDLKQGKRLLGNVTGEQVLKEKEEKEHRIQILEKT VERLREELKREREDLRTEKSKRQITEKAVLDSYKNVEQTKTKLEDKLELHKQVLKRISDELEKLKHAEGNLPEGTSVVQLLSGTILDDLAATYVSAIENF ERVALSVSSELGAGVQSVENPLIPDASATVTPGQAVPSQATIVSPVAPHAHLPTKMAEEKERKVPVPKPNVETRKAGRKLVRPRLVRPEEPPSDVEMSEV DGSTSVAKLTPASESETQHNITLFSQPIARKRLASSSSDLNEQPLNQGETSSDVPPPVLKRPKGTDSVQEGSEGQAATPSETLVTLPAVEESAVADLSQG EEEAVAEKEEVETSGEKAEPPKESEQLDDTTQVEPENETNEVAEEILDKPSESGMEIYDGSKDHATAEDNQQLPVEFENEREEGELVAEVEEGADMSNMA GSPETGEVLPDTTPVASPARIDDEAMVPVGMESGEINSPEMITDEKNDEGDIVEEIGEGSDKSNDGGDQIAVETDQSPEAASVAGERTTATANTEMDASK QASSSGAEAEEVRQVSPASNTSTVVNLAERARQRAMLRQGGGGAPAVLSPPSGRGRGRVLRGRIARGARGGRGGRSGRGQTPGQQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	0	1
AT3G50370			unknown protein		Potri.005G137700 [exp]	1.00	0.9388
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	1.41	0.9146
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	2.00	0.9029
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	2.23	0.8975
AT3G50370			unknown protein		Potri.007G043300 [exp]	3.00	0.9103
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	4.89	0.8877
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	4.89	0.8760
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.014G189900 [exp]	5.29	0.8912
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	6.00	0.8827
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	6.48	0.8971	HAF902

Compare expression of checked genes

Potri.008G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.