Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79330 510 / 0 ATMC5, AMC6, ATMCP2B metacaspase 2b, metacaspase 5 (.1) AT1G79340 504 / 2e-178 AtMCP2d, ATMC4 metacaspase 2d, metacaspase 4 (.1) AT1G79320 438 / 3e-153 AtMCP2c, ATMC6 metacaspase 2c, metacaspase 6 (.1) AT1G79310 420 / 2e-145 AtMCP2a, ATMC7 metacaspase 2a, metacaspase 7 (.1) AT1G16420 300 / 8e-99 AtMCP2e, ATMC8 metacaspase 2e, ARABIDOPSIS THALIANA METACASPASE 8, metacaspase 8 (.1) AT5G04200 234 / 5e-74 AtMCP2f, ATMC9 metacaspase 2f, metacaspase 9 (.1) AT4G25110 92 / 5e-20 AtMCP1c, ATMC2 metacaspase 1c, metacaspase 2 (.1.2) AT1G02170 89 / 4e-19 AtMCP1b, ATMC1, LOL3, ATMCPB1, MCP1B, AMC1 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) AT5G64240 79 / 4e-16 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G175000 [exp] 683 / 0 AT1G79340 496 / 2e-175 metacaspase 2d, metacaspase 4 (.1) Potri.006G026500 [exp] 173 / 1e-50 AT5G04200 426 / 4e-151 metacaspase 2f, metacaspase 9 (.1) Potri.016G024500 [exp] 171 / 5e-50 AT5G04200 425 / 1e-150 metacaspase 2f, metacaspase 9 (.1) Potri.014G052500 [exp] 95 / 3e-21 AT1G02170 513 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112200 [exp] 90 / 2e-19 AT1G02170 446 / 4e-157 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G112700 [exp] 86 / 4e-18 AT1G02170 460 / 9e-163 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.012G113100 [exp] 84 / 2e-17 AT1G02170 471 / 3e-167 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G053100 [exp] 82 / 7e-17 AT1G02170 378 / 1e-129 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Potri.017G052600 [exp] 78 / 1e-15 AT1G02170 254 / 8e-82 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001761 [exp] 558 / 0 AT1G79340 560 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10001835 [exp] 557 / 0 AT1G79340 554 / 0.0 metacaspase 2d, metacaspase 4 (.1) Lus10012106 [exp] 173 / 1e-50 AT5G04200 392 / 2e-137 metacaspase 2f, metacaspase 9 (.1) Lus10010437 [exp] 142 / 9e-41 AT5G04200 204 / 2e-66 metacaspase 2f, metacaspase 9 (.1) Lus10042857 [exp] 89 / 2e-19 AT1G02170 501 / 3e-179 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10028157 [exp] 90 / 3e-19 AT1G02170 540 / 0.0 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10035630 [exp] 85 / 7e-18 AT5G64240 214 / 1e-66 metacaspase 1a, metacaspase 3 (.1.2) Lus10010436 [exp] 74 / 2e-16 AT5G04200 92 / 2e-24 metacaspase 2f, metacaspase 9 (.1) Lus10009321 [exp] 80 / 5e-16 AT1G02170 327 / 8e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10015843 [exp] 76 / 1e-14 AT1G02170 329 / 2e-110 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF00656 [poplar] [flax] Peptidase_C14 Caspase domain
Representative CDS sequence Show only first row Show all	>Potri.008G081100.1 pacid=42808787 polypeptide=Potri.008G081100.1.p locus=Potri.008G081100 ID=Potri.008G081100.1.v4.1 annot-version=v4.1 ATGACAAAGAAAGCAGTGTTGATAGGCTGCAACTACCCAGGAACAAAAGCTGAACTTAAAGGTTGCGTAAATGATGTTAAGAGGATGTGCAGATGTCTTG TTGATCGATATGGGTTTTATGAAGATAACATAACAATCTTGATAGACACCGATGATTCTTACACACTGCCAACTGGGAAAAACGTACGCAAGGCGCTCAA TGATCTGGTTCTCTCTTCGGAGCCTGGAGACTTTTTATTTGTCCATTATAGTGGACATGGGACAAGGTTGCCTGCTGAAACTGGAGAGGAGGATGATACT GGTTATGATGAGTGCATTGTCCCTTGTGATATGAATCTTATCACTGATGATGATTTCAGAGATTTGGTGGATCAGGTTCCAGAAGGTTGCCGCATAACAA TTGTATCTGATTCATGCCATAGTGGTGGCCTCATTGATGAGACTAAAGAGCAAATAGGAGAGAGCACAAAGCGTCAAGATGAGGAGGAGAAGGACTCTGG CATCAGATTTAAAAGCTTCTTGAAACAGACTGTGAAAGATGCATTTGAATCTCGTGGAGTTCACATCCCTTCCGGATTGCATCGCAACCGGCATGGCAAG GAGGAAGATTTTGATGATAGAGCAGTTGAAGGAGAGTATGGTGAACGAGGGTATGTGAGAAGCAGATCTCTGCCCCTCTCAACTCTCATAGAAATACTCA AGCAAAAGACTGGTAAGGATGACATTGATGTTGGGAAGCTGAGGCCAACCCTTTTCAATGTCTTTGGAGAAGATGCAAGCCCTAAGGTGAAGAAGTTCAT GAAGATTATCATGGATAAAGTCCAACACGGTGATGGAGAAAGTGGAGGTGGTGGATTCTTTGGAATGGTTGGGAATCTGGCCCAGGAATTTCTCAAACAA CAACTGGAGCATGATGAAGGGTATGCACAGCCTGCCCTTGAGACAGAAGTGGGCAGTAAGCAAGAAGTTTATGCGGGAGCAACCAAGCATGCTCTACCAG ATGGTGGGATTTTGATCAGTGGCTGCCAGTCCGACCAAACTTCTGCTGATGCCAGTCCAGGAGGAAATCCTGCTGAAGCTTATGGAGCTTTTAGTAATGC TATCCAGATTATCCTTGCAGAGACAGCTGGTGAGATTTCTAATCAGGAGCTTGTTTTGAGGGCTAGGAAGATGCTGAAGAAGCAGGGTTTCATCCAGCGA CCTGGCCTCTACTGCAGCGATCATCATGTTGAAGTTCCATTTGTGTGCTGA
AA sequence Show only first row Show all	>Potri.008G081100.1 pacid=42808787 polypeptide=Potri.008G081100.1.p locus=Potri.008G081100 ID=Potri.008G081100.1.v4.1 annot-version=v4.1 MTKKAVLIGCNYPGTKAELKGCVNDVKRMCRCLVDRYGFYEDNITILIDTDDSYTLPTGKNVRKALNDLVLSSEPGDFLFVHYSGHGTRLPAETGEEDDT GYDECIVPCDMNLITDDDFRDLVDQVPEGCRITIVSDSCHSGGLIDETKEQIGESTKRQDEEEKDSGIRFKSFLKQTVKDAFESRGVHIPSGLHRNRHGK EEDFDDRAVEGEYGERGYVRSRSLPLSTLIEILKQKTGKDDIDVGKLRPTLFNVFGEDASPKVKKFMKIIMDKVQHGDGESGGGGFFGMVGNLAQEFLKQ QLEHDEGYAQPALETEVGSKQEVYAGATKHALPDGGILISGCQSDQTSADASPGGNPAEAYGAFSNAIQIILAETAGEISNQELVLRARKMLKKQGFIQR PGLYCSDHHVEVPFVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79330		ATMC5, AMC6, AT...	metacaspase 2b, metacaspase 5 ...		Potri.008G081100 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Potri.001G158900 [exp]	5.47	0.7879	Pt-RAN1.4
AT2G44160		MTHFR2	methylenetetrahydrofolate redu...		Potri.007G147300 [exp]	11.53	0.8085	Pt-MTHFR1.2
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.010G159800 [exp]	24.18	0.7447
AT2G27770			Plant protein of unknown funct...		Potri.009G148300 [exp]	33.76	0.7280
					Potri.008G101675 [exp]	38.88	0.7582
AT3G21680			unknown protein		Potri.014G153200 [exp]	40.73	0.7395
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097000 [exp]	40.84	0.7744	Pt-LAC2.2
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Potri.001G420200 [exp]	43.16	0.7761	Pt-GPT.4
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	48.74	0.7699
AT4G34215			Domain of unknown function (DU...		Potri.001G300800 [exp]	56.55	0.6976

Compare expression of checked genes

Potri.008G081100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.