Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79420 522 / 0 Protein of unknown function (DUF620) (.1) AT3G19540 370 / 2e-125 Protein of unknown function (DUF620) (.1) AT1G49840 362 / 4e-122 Protein of unknown function (DUF620) (.1) AT1G27690 348 / 1e-117 Protein of unknown function (DUF620) (.1) AT5G05840 306 / 4e-101 Protein of unknown function (DUF620) (.1) AT5G06610 280 / 6e-92 Protein of unknown function (DUF620) (.1) AT5G66740 260 / 5e-84 Protein of unknown function (DUF620) (.1) AT3G55720 244 / 4e-77 Protein of unknown function (DUF620) (.1) AT1G75160 233 / 2e-73 Protein of unknown function (DUF620) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G174200 [exp] 731 / 0 AT1G79420 524 / 0.0 Protein of unknown function (DUF620) (.1) Potri.001G297500 [exp] 382 / 2e-130 AT3G19540 665 / 0.0 Protein of unknown function (DUF620) (.1) Potri.009G092400 [exp] 379 / 7e-129 AT3G19540 644 / 0.0 Protein of unknown function (DUF620) (.1) Potri.014G019900 [exp] 374 / 3e-127 AT3G19540 583 / 0.0 Protein of unknown function (DUF620) (.1) Potri.010G195200 [exp] 322 / 3e-107 AT5G05840 600 / 0.0 Protein of unknown function (DUF620) (.1) Potri.008G062500 [exp] 316 / 4e-105 AT5G05840 614 / 0.0 Protein of unknown function (DUF620) (.1) Potri.016G062400 [exp] 300 / 9e-100 AT5G06610 474 / 1e-168 Protein of unknown function (DUF620) (.1) Potri.006G196800 [exp] 300 / 9e-100 AT5G06610 457 / 8e-162 Protein of unknown function (DUF620) (.1) Potri.002G262400 [exp] 256 / 1e-82 AT1G75160 541 / 0.0 Protein of unknown function (DUF620) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001755 [exp] 470 / 5e-165 AT1G79420 460 / 2e-160 Protein of unknown function (DUF620) (.1) Lus10001843 [exp] 460 / 4e-161 AT1G79420 452 / 2e-157 Protein of unknown function (DUF620) (.1) Lus10013891 [exp] 377 / 3e-128 AT3G19540 674 / 0.0 Protein of unknown function (DUF620) (.1) Lus10024790 [exp] 377 / 3e-128 AT3G19540 630 / 0.0 Protein of unknown function (DUF620) (.1) Lus10018707 [exp] 313 / 4e-103 AT3G19540 566 / 0.0 Protein of unknown function (DUF620) (.1) Lus10004669 [exp] 309 / 6e-102 AT5G05840 558 / 0.0 Protein of unknown function (DUF620) (.1) Lus10040241 [exp] 300 / 1e-98 AT5G05840 551 / 0.0 Protein of unknown function (DUF620) (.1) Lus10026605 [exp] 285 / 2e-95 AT3G19540 405 / 2e-141 Protein of unknown function (DUF620) (.1) Lus10015972 [exp] 285 / 2e-93 AT5G06610 426 / 6e-149 Protein of unknown function (DUF620) (.1) Lus10013534 [exp] 277 / 2e-90 AT5G06610 400 / 7e-139 Protein of unknown function (DUF620) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04788 [poplar] [flax] DUF620 Protein of unknown function (DUF620)
Representative CDS sequence Show only first row Show all	>Potri.008G081700.1 pacid=42808509 polypeptide=Potri.008G081700.1.p locus=Potri.008G081700 ID=Potri.008G081700.1.v4.1 annot-version=v4.1 ATGGGCTCGAGAGCTAGATGGAAGCAAAGATGGTGCACGCAAACCTTAACTCCACTGCTAGAAGGTCCGGACCCCGATATGCAAGAAGAAGGTAACAAAA AGGAAAGTTCATGGGAAATAATTCGTGAATGGTTTCGATTGCAAAGGGGTCTTTCTGCAGGAAACAATTTTACAGTCTCCTTGTATGGGAGCATTCCAGC CAAAAGACAAGATTTGAGGCTTCTACTTGGAGTATTGGGTTGCCCTCTAGCCCCAATCCCTCTAGTTAACGACCCCATCCATCGCATTCACATTAAGAAC ACACCCATTGAAAATTCTGCCGCGCATTATATCATACAGCAATACTTGGCATCAACAGGGTGTTTAAAGCAACAAAAATGCATGAAAAACATGTACTCAG CAGGGAGTGTGAAGATGGTCCGTTGTGAGACGGAAATCTCATCAGGAAAGAATGTGAAGAGCTTGGGGACTAGAAGTGGTGAAAGTGGGTGCTTTGTTCT TTGGCAAATGTTGCCAGGGATGTGGTCTCTTGAATTGGTCGTTGGAGAAAATAAAGTCATAGCAGGCAGCGATGGGAAGACTGTGTGGCGGCATACTCCT TGGCTTGGTACTCATGCTGCCAAAGGACCCCAACGCCCTCTACGTCGCATAATCCAGGGCTTAGATCCAAAGAATACAGCCAACTTATTCGCTAAAGCAC AGTGCCTAGGTGAGAAACGAATCGGCGAGGATGATTGCTTCGTTTTAAAAGTAGCTGCAGACAGAGAAGCTGTATTTGAAAGAAGTGAAGGACCAGCTGA AGTGCTCAGGCATGTACTCTATGGCTATTTTTGCCAAAAAAGTGGTCTCTTAATATACCTGGAGGACTCCCATCTAACCAGGGTACAAACCCCAGAAAAC GAAACTATCTACTGGGAGACTACCATAGGAAGCAGTATCGGGGACTACAGAGATGTAGATGGCGTGCTAATTGCTCATCAAGGAAGGTCAATCGCTACAG TTTTTCGATTCGAGGAGTTGTCTGTTCAGCATAGTAGGACTAGAATGGAAGAAGTGTGGAGGATTGATGATGTTGTGTTCAATGTGCCAGGGCTCTCCAT GGACTATTTCATCCCTCCCGCTGATATCTTTGACGCGTCCCCGTGA
AA sequence Show only first row Show all	>Potri.008G081700.1 pacid=42808509 polypeptide=Potri.008G081700.1.p locus=Potri.008G081700 ID=Potri.008G081700.1.v4.1 annot-version=v4.1 MGSRARWKQRWCTQTLTPLLEGPDPDMQEEGNKKESSWEIIREWFRLQRGLSAGNNFTVSLYGSIPAKRQDLRLLLGVLGCPLAPIPLVNDPIHRIHIKN TPIENSAAHYIIQQYLASTGCLKQQKCMKNMYSAGSVKMVRCETEISSGKNVKSLGTRSGESGCFVLWQMLPGMWSLELVVGENKVIAGSDGKTVWRHTP WLGTHAAKGPQRPLRRIIQGLDPKNTANLFAKAQCLGEKRIGEDDCFVLKVAADREAVFERSEGPAEVLRHVLYGYFCQKSGLLIYLEDSHLTRVQTPEN ETIYWETTIGSSIGDYRDVDGVLIAHQGRSIATVFRFEELSVQHSRTRMEEVWRIDDVVFNVPGLSMDYFIPPADIFDASP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79420			Protein of unknown function (D...		Potri.008G081700 [exp]	0	1
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.006G261200 [exp]	2.44	0.7419	PPLZ02.2
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Potri.006G107200 [exp]	3.46	0.7664
AT4G16380			Heavy metal transport/detoxifi...		Potri.006G019100 [exp]	6.70	0.7180
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Potri.005G147100 [exp]	11.48	0.6670	HAT22.2
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	12.80	0.7107
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	13.78	0.6733
AT5G66390			Peroxidase superfamily protein...		Potri.005G118700 [exp]	13.96	0.7081
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	14.73	0.6875
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.001G248700 [exp]	15.74	0.6757
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.001G386900 [exp]	16.24	0.6246

Compare expression of checked genes

Potri.008G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.