Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06900 94 / 7e-22 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G45550 93 / 1e-21 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 92 / 4e-21 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45570 91 / 7e-21 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 91 / 8e-21 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G26230 89 / 2e-20 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26210 89 / 4e-20 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26290 88 / 6e-20 CYP71B26 "cytochrome P450, family 71, subfamily B, polypeptide 26", cytochrome P450, family 71, subfamily B, polypeptide 26 (.1) AT5G07990 88 / 8e-20 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT3G26280 88 / 8e-20 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G364900 [exp] 145 / 3e-42 AT3G26300 228 / 1e-70 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365366 [exp] 142 / 5e-41 AT3G26230 228 / 3e-71 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.001G365300 [exp] 143 / 2e-40 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 143 / 8e-40 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 143 / 9e-40 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 142 / 3e-39 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131001 [exp] 135 / 9e-39 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.011G130800 [exp] 136 / 2e-37 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 135 / 9e-37 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 140 / 2e-38 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10013194 [exp] 138 / 6e-38 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10004907 [exp] 136 / 2e-37 AT3G26330 330 / 2e-108 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10010545 [exp] 136 / 3e-37 AT3G26330 321 / 8e-105 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10009903 [exp] 132 / 1e-35 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10029035 [exp] 131 / 3e-35 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10034230 [exp] 126 / 2e-33 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10012767 [exp] 124 / 8e-33 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030708 [exp] 122 / 4e-32 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10041667 [exp] 122 / 4e-32 AT3G26300 375 / 3e-125 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G082301.2 pacid=42807501 polypeptide=Potri.008G082301.2.p locus=Potri.008G082301 ID=Potri.008G082301.2.v4.1 annot-version=v4.1 ATGCATACTGGAGCTGCTAAGAGCAAAACGCGTTCAGTCATTCCAAGCAATCAGGGAAGAAGAGCACTTCAAGGGCATCCTTTGGGAAGAAATCCAAAGA CCACGAAGCATTTAAATCTGTCATGGAGGAAATCATGGAGTGGTACGAGGCAAAAACTTAAGATTCTGCATCAGAAAGCAGACCAGATACTTGAAAGCAT AATTAATGAAGATAGAGCTAGAGAGGCACCCAGCAATGAGATTGAAGCTGATGACCTTGTTCATGTTCTTTTGAATCTTCTGGGTCATGGAAAACTTGAA TTTCCCTTGACTACAGACAACATAAAATCCGTTAACCTGGACATGTTCCTTGGTGGGACAGAAACGTCATCTACAGTTTTAGATTGGGCAATCGCAGGAC TGCTAAGGAATCCAAGAGTGATGAAGAAGGCACAAGCAGAAGTGAGGCAAGTCTTTTGTACAGCAGGGAATGTCGATGAAACAGACCTTGAGAAATTAAA GTACCTTGAACTGGTAGTCAAAGAAACTTTGAGACTGCACCCTCCTCTTTCTTTACTACTTCCAAGAGAAAGCAGAGAGGATTGTGAGATTAATGGATTC AAAATACCTGCCAAAATCAAAGTCGTTATTAATGTATGGGCAATTGGCAGAGATCCTGCTTACTGGAATGAACCAGAAAAAATTCCATCCAGAGAGATTC CATGA
AA sequence Show only first row Show all	>Potri.008G082301.2 pacid=42807501 polypeptide=Potri.008G082301.2.p locus=Potri.008G082301 ID=Potri.008G082301.2.v4.1 annot-version=v4.1 MHTGAAKSKTRSVIPSNQGRRALQGHPLGRNPKTTKHLNLSWRKSWSGTRQKLKILHQKADQILESIINEDRAREAPSNEIEADDLVHVLLNLLGHGKLE FPLTTDNIKSVNLDMFLGGTETSSTVLDWAIAGLLRNPRVMKKAQAEVRQVFCTAGNVDETDLEKLKYLELVVKETLRLHPPLSLLLPRESREDCEINGF KIPAKIKVVINVWAIGRDPAYWNEPEKIPSREIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Potri.008G082301 [exp]	0	1
AT5G38260			Protein kinase superfamily pro...		Potri.007G125200 [exp]	1.41	0.9417
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Potri.009G114001 [exp]	2.44	0.9298
AT1G77460			Armadillo/beta-catenin-like re...		Potri.002G081101 [exp]	2.82	0.9296
AT1G16290			unknown protein		Potri.010G172300 [exp]	5.09	0.8854
AT3G46210			Ribosomal protein S5 domain 2-...		Potri.006G239100 [exp]	5.29	0.8818
					Potri.004G012000 [exp]	5.47	0.9265
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.017G070600 [exp]	7.48	0.9111
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.008G108201 [exp]	8.12	0.8725
AT5G47900			Protein of unknown function (D...		Potri.004G176400 [exp]	10.48	0.8258
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.014G195300 [exp]	10.95	0.8734

Compare expression of checked genes

Potri.008G082301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.