Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 817 / 0 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 306 / 2e-92 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 241 / 4e-68 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT2G24210 119 / 7e-28 AtTPS10 terpene synthase 10 (.1) AT4G16730 116 / 6e-27 AtTPS02 terpene synthase 02 (.1) AT3G25830 112 / 2e-25 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 112 / 2e-25 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G14490 108 / 2e-24 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25810 104 / 4e-23 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 103 / 1e-22 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082400 [exp] 1524 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 314 / 1e-94 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.002G052100 [exp] 302 / 2e-90 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.005G210300 [exp] 298 / 8e-89 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 158 / 1e-40 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 155 / 1e-39 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 154 / 6e-39 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.015G085500 [exp] 148 / 1e-37 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 143 / 6e-36 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016598 [exp] 839 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 710 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 705 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10014673 [exp] 696 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 639 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 613 / 0 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 611 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 588 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 577 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 539 / 7e-180 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G082700.1 pacid=42807699 polypeptide=Potri.008G082700.1.p locus=Potri.008G082700 ID=Potri.008G082700.1.v4.1 annot-version=v4.1 ATGTCTTGCATTCGTCCCTGGTTCTGCCCTTCTTCTATATCAGCAACCCTGACAGACCCTGCATCAAAATTAGTCACAGGAGAATTCAAGACAACCAGTC TGAACTTTCATGGAACTAAGGAAAGGATCAAGAAGATGTTTGATAAGATTGAATTGTCAGTGTCTTCATATGACACTGCTTGGGTGGCAATGGTCCCATC TCCAGATTGTCCGGAAACTCCTTGTTTTCCAGAGTGCACAAAATGGATTTTGGAAAATCAACTTGGTGATGGCTCCTGGAGTCTTCCTCATGGCAATCCA TTATTAGTTAAGGATGCTCTTTCATCTACATTAGCGTGCATCCTTGCATTGAAGCGATGGGGTATCGGTGAAGAACAAATAAATAAAGGCCTTCGATTTA TTGAGTTGAATTCCGCTTCAGTTACGGATAACGAGCAACATAAACCAATTGGATTTGATATAATATTTCCTGGCATGATTGAATATGCCAAAGATTTGGA TTTGAACCTCCCTTTGAAGCCGACAGATATAAATTCCATGCTCCACAGGAGGGCTTTGGAGCTTACAAGTGGCGGTGGCAAGAACTTGGAGGGAAGAAGA GCCTACTTAGCATATGTTTCGGAAGGAATTGGAAAATTACAGGATTGGGAAATGGCCATGAAATATCAAAGAAAGAATGGATCACTGTTCAATTCACCAT CCACCACAGCAGCTGCCTTTATTCATATTCAAGATGCTGAGTGTCTCCATTATATTCGTTCACTCTTACAGAAGTTTGGGAATGCAGTTCCAACCATTTA TCCTTTGGATATATATGCTCGTCTTTCTATGGTTGATGCTCTTGAAAGGTTGGGAATCGATCGGCATTTTAGGAAGGAAAGAAAATTTGTTTTGGACGAA ACATACCGATTTTGGTTGCAGGGGGAGGAAGAGATATTTTCTGATAATGCCACTTGTGCTTTGGCATTTAGGATATTACGTTTGAACGGATATGATGTCT CTCTAGATACACTAAACCAATTTTCAGAAGATCATTTCTCTAATTCACTGGGAGGATATTTGAAGGATTCGGGAGCTGCCTTAGAGTTGTACAGAGCTCT GCAGCTAAGTTATCCAGATGAATCACTTCTGGAAAAACAAAATTCTCGGACAAGCTATTTCCTGAAACAGGGATTATCCAACGTTTCACTTTGTGGAGAT AGGCTTCGTAAAAATATTATCGGAGAGGTGCATGATGCTCTCAATTTTCCTGACCATGCAAATTTGCAACGCTTAGCTATCAGAAGAAGAATTAAACATT ATGCTACAGATGATACGAGGATTTTGAAAACTTCGTATCGTTGTTCGACTATTGGTAACCAGGATTTTCTCAAATTGGCTGTAGAAGACTTCAATATCTG TCAATCAATACAGCGTGAAGAATTTAAACATATCGAGAGGTGGGTTGTAGAGAGGAGACTGGACAAGCTAAAGTTTGCTAGGCAGAAGGAGGCCTACTGT TACTTCTCTGCTGCAGCAACTCTCTTCGCTCCAGAACTATCTGATGCACGCATGTCATGGGCAAAAAATGGTGTGCTTACTACTGTTGTTGATGACTTCT TTGATGTTGGTGGTTCTGAAGAAGAACTGGTAAACCTTATTGAATTGATTGAGAGGTGGGATGTCAATGGCAGTGCTGATTTTTGTTCTGAGGAAGTTGA GATCATATATTCGGCAATTCACAGCACTATAAGTGAGATAGGAGAAAAATCTTTCGGATGGCAAGGACGCGATGTGAAAAGCCATGTTATCAAGATTTGG TTGGATTTGCTCAAATCCACGTTGACAGAGGCACAATGGTCAAGTAACAAATCAGTGCCAACCCTTGATGAATATATGACAACTGCACATGTATCGTTCG CCCTAGGGCCTATTGTCCTTCCAGCTCTGTATTTTGTGGGGCCTAAGCTTTCAGAGGAGGTTGCTGGACATCCTGAATTGCTTAATCTATACAAGGTTAC GAGCACTTGCGGGCGTCTGCTCAATGACTGGAGAAGCTTTAAGAGAGAATCTGAAGAAGGGAAATTGAATGCCATCTCATTGTACATGATTCACAGCGGT GGTGCTTCAACTGAAGAAGAGACCATTGAACATTTTAAAGGATTGATCGACAGCCAGAGAAGACAATTGCTTCAATTAGTTTTGCAGGAAAAGGATAGTA TAATTCCTAGACCCTGCAAGGATTTGTTTTGGAACATGATAAAACTATTGCACACGTTCTACATGAAGGATGATGGATTCACTTCAAACGAGATGAGAAA TGTTGTCAAGGCAATAATAAATGAACCCATCTCTCTAGATGAATTATAA
AA sequence Show only first row Show all	>Potri.008G082700.1 pacid=42807699 polypeptide=Potri.008G082700.1.p locus=Potri.008G082700 ID=Potri.008G082700.1.v4.1 annot-version=v4.1 MSCIRPWFCPSSISATLTDPASKLVTGEFKTTSLNFHGTKERIKKMFDKIELSVSSYDTAWVAMVPSPDCPETPCFPECTKWILENQLGDGSWSLPHGNP LLVKDALSSTLACILALKRWGIGEEQINKGLRFIELNSASVTDNEQHKPIGFDIIFPGMIEYAKDLDLNLPLKPTDINSMLHRRALELTSGGGKNLEGRR AYLAYVSEGIGKLQDWEMAMKYQRKNGSLFNSPSTTAAAFIHIQDAECLHYIRSLLQKFGNAVPTIYPLDIYARLSMVDALERLGIDRHFRKERKFVLDE TYRFWLQGEEEIFSDNATCALAFRILRLNGYDVSLDTLNQFSEDHFSNSLGGYLKDSGAALELYRALQLSYPDESLLEKQNSRTSYFLKQGLSNVSLCGD RLRKNIIGEVHDALNFPDHANLQRLAIRRRIKHYATDDTRILKTSYRCSTIGNQDFLKLAVEDFNICQSIQREEFKHIERWVVERRLDKLKFARQKEAYC YFSAAATLFAPELSDARMSWAKNGVLTTVVDDFFDVGGSEEELVNLIELIERWDVNGSADFCSEEVEIIYSAIHSTISEIGEKSFGWQGRDVKSHVIKIW LDLLKSTLTEAQWSSNKSVPTLDEYMTTAHVSFALGPIVLPALYFVGPKLSEEVAGHPELLNLYKVTSTCGRLLNDWRSFKRESEEGKLNAISLYMIHSG GASTEEETIEHFKGLIDSQRRQLLQLVLQEKDSIIPRPCKDLFWNMIKLLHTFYMKDDGFTSNEMRNVVKAIINEPISLDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082700 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	1.00	0.9627
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	3.87	0.8073
AT4G27190			NB-ARC domain-containing disea...		Potri.001G447132 [exp]	5.19	0.7878
AT1G25425		CLE43	CLAVATA3/ESR-RELATED 43 (.1)		Potri.010G124900 [exp]	7.54	0.7582
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011169 [exp]	10.77	0.8238
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	13.26	0.7922
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003832 [exp]	13.63	0.7987
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170400 [exp]	14.49	0.7923
AT3G14470			NB-ARC domain-containing disea...		Potri.004G169800 [exp]	14.86	0.7684
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	15.87	0.7672

Compare expression of checked genes

Potri.008G082700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.