Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16350 718 / 0 Aldolase-type TIM barrel family protein (.1) AT1G79470 703 / 0 Aldolase-type TIM barrel family protein (.1) AT3G14150 42 / 0.0006 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173600 [exp] 877 / 0 AT1G16350 661 / 0.0 Aldolase-type TIM barrel family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001763 [exp] 598 / 0 AT1G54310 653 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000276 [exp] 461 / 2e-160 AT1G16350 469 / 5e-164 Aldolase-type TIM barrel family protein (.1) Lus10011631 [exp] 58 / 2e-10 ND 48 / 8e-08 Lus10036443 [exp] 0 / 1 AT1G16350 113 / 1e-29 Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF00478 [poplar] [flax] IMPDH IMP dehydrogenase / GMP reductase domain
Representative CDS sequence Show only first row Show all	>Potri.008G082800.1 pacid=42808231 polypeptide=Potri.008G082800.1.p locus=Potri.008G082800 ID=Potri.008G082800.1.v4.1 annot-version=v4.1 ATGGCGACAGAATTCGAAGACGGTTTTCCCGCCGAAAAACTCTTCAACCAAGGCTACTCCTACACATACGACGATGTCATTTTTCTCCCTCACTACATCG ACTTCCCAACCGACGCCGTTAACCTCTCAACTAAACTCTCCCGCAATGTCCCCCTCTCTATCCCATGGGTTTCCTCTCCCATGGACACCGTCACTGAGTC CTACATGGCTTCAGCGATGGCGGCGCTCGGTGGAATTGGGATTGTTCACTCTAATGTAACACCGTCTGAGCAAGCTGATATGATCAGATCCGTCAAGTCA CGCCGCGTGCCTATATTGTCGAGTCCAGTTTTTAAGGCGCCTGATTCACGGATTGCTGACGAGTTTGACAGCCATGATGTTCCTTTTGTTCTTGTCACTC AATCAGGGACTCAGAAGACGAAGTTGCTGGGGTATGTTGCGAAGTCTGATTGGTTGGGTTTGAAAGATAAAGAAATTAAATTGGGGGAGGTCATGCGCAC GGATGCGAACGTGTGCGTGCCGTGGGATTATGATTTGAGGCAGATTGATGGGAAGTTAAAAGAGGAAGGGCGTGATTTTGTGGTGGTGGAGGAGGGAGGA GAGGTGGTGGATGCGGTGACGAAGGAGGAGGTTGACAGGGTGAAGGGATATCCTAAGCTAGGGAAGGGAACGGTGGGGTCTGATGGGAGGTGGATGGTTG GGGCGGCGATTGGGACAAGGGATTCGGATAAGGAGAGGTTGGAGCAGTTGGTGAAAGCAGGGGTTGATGTTATTGTGCTGGATAGTTCACAAGGGAATTC TGTTTATCAGGTTGAGATGATTAAGTATGTGAAACAGACCTATCCGGAGCTAGATGTGATCGGTGGGAATGTGGTGACAATGAGTCAAGCACAGAATTTG ATCAAGGCAGGTGTAGATGGGTTGAGAGTTGGTATGGGGTCTGGGTCCATATGCACCACACAAGAGGTTTGTGCAGTTGGGCGAGGACAGGCAACTGCTG TTTACAAGGTTTCATCCATTGCCGCACAAAGTGGCATTCCTGTTATTGCAGATGGTGGCATTTCATTCTCAGGGCATATTGTCAAGGCCCTGGTGCTTGG GGCATCTACTGTAATGATGGGAAGCTTTTTAGCCGGAAGTACTGAAGCTCCTGGGGCTTATGAGTACGATGAGAAGAAAAAATGCCGTGTTAAAAAATAT CGTGGCATGGGCTCCCTTGAAGCAATGACTAAAGGGAGTGATCAAAGATACCTGGGTGATACTGCTAAGCTAAAGATTGCTCAGGGAGTTGTAGGAGCAG TTGCTGATAAAGGTTCTGTTTTGAAGTTAGTACCTTACACTATGCAAGCAGTAAAGCAAGGGTTCCAGGATCTTGGTGCTTCGTCGTTGCAGTCTGCTCA TGATTTGTTAAGGTCAAAGACACTTAGGCTTGAGGTACGGACAGCGGCAGCACAAGTTGAGGGTGGAGTTCATGGACTGACTTCACATGAGAAGAAAGCC TTTTGA
AA sequence Show only first row Show all	>Potri.008G082800.1 pacid=42808231 polypeptide=Potri.008G082800.1.p locus=Potri.008G082800 ID=Potri.008G082800.1.v4.1 annot-version=v4.1 MATEFEDGFPAEKLFNQGYSYTYDDVIFLPHYIDFPTDAVNLSTKLSRNVPLSIPWVSSPMDTVTESYMASAMAALGGIGIVHSNVTPSEQADMIRSVKS RRVPILSSPVFKAPDSRIADEFDSHDVPFVLVTQSGTQKTKLLGYVAKSDWLGLKDKEIKLGEVMRTDANVCVPWDYDLRQIDGKLKEEGRDFVVVEEGG EVVDAVTKEEVDRVKGYPKLGKGTVGSDGRWMVGAAIGTRDSDKERLEQLVKAGVDVIVLDSSQGNSVYQVEMIKYVKQTYPELDVIGGNVVTMSQAQNL IKAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVSSIAAQSGIPVIADGGISFSGHIVKALVLGASTVMMGSFLAGSTEAPGAYEYDEKKKCRVKKY RGMGSLEAMTKGSDQRYLGDTAKLKIAQGVVGAVADKGSVLKLVPYTMQAVKQGFQDLGASSLQSAHDLLRSKTLRLEVRTAAAQVEGGVHGLTSHEKKA F

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16350			Aldolase-type TIM barrel famil...		Potri.008G082800 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.014G157100 [exp]	5.56	0.7407
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Potri.006G183700 [exp]	9.16	0.7524
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	11.31	0.8245
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.013G061500 [exp]	14.14	0.7463
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	20.49	0.8241
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	24.81	0.7800
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	27.65	0.7943
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.003G204100 [exp]	29.52	0.7937
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	40.98	0.7800
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	43.11	0.7696

Compare expression of checked genes

Potri.008G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.