Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16330 498 / 8e-169 CYCB3;1 cyclin b3;1 (.1) AT5G06150 229 / 7e-68 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G20610 225 / 1e-66 CYCB2;3 Cyclin B2;3 (.1) AT1G76310 223 / 5e-66 CYCB2;4 CYCLIN B2;4 (.1) AT3G11520 218 / 2e-64 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT2G26760 213 / 1e-62 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT4G37490 206 / 9e-60 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT5G11300 183 / 4e-51 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT4G35620 183 / 5e-51 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 181 / 2e-50 CYCB2;1 Cyclin B2;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173200 [exp] 1015 / 0 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.002G010000 [exp] 233 / 9e-70 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.009G066600 [exp] 233 / 1e-69 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.001G272000 [exp] 232 / 2e-69 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.005G251400 [exp] 230 / 2e-68 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.016G033000 [exp] 229 / 6e-68 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 226 / 1e-66 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.005G100000 [exp] 225 / 1e-66 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 215 / 4e-63 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001765 [exp] 486 / 1e-161 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10012261 [exp] 238 / 9e-71 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10009596 [exp] 236 / 1e-69 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10016015 [exp] 231 / 3e-69 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1) Lus10026803 [exp] 217 / 2e-63 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10036080 [exp] 214 / 1e-62 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10030746 [exp] 198 / 9e-57 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 195 / 1e-55 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10003800 [exp] 186 / 7e-52 AT5G06150 387 / 2e-131 cyclin B 1;2, Cyclin family protein (.1) Lus10008103 [exp] 180 / 2e-49 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G083200.6 pacid=42806758 polypeptide=Potri.008G083200.6.p locus=Potri.008G083200 ID=Potri.008G083200.6.v4.1 annot-version=v4.1 ATGGTGGCCGCTAAAGGAAAAGTCAGCGTGGGTATGAATCGAGTTGCTGAAGATGCCCATACCTGCAGAACAGGTTTTAGAACTTTTAAAGTTTATTCAG AAAATGAAAAGAATAAGGATGCTGCTAGCATTAAATCTGCCAGGGATAGTTTTCTTCCTGCAAGAAGGATACCTAACAAAGGATATCCTCCTGCCAATGC AAGTGATTCAAAGGGGAGCTTGAAAATTGCGGGGAAGAACAATTGCAAACACGACAATTCTGGACTGACTGTAAATCAAAATGTCAGAAGAAAAGCATTG GCTGATGTAAGCAATGTGCAGAGCGGTAATGCAAGGGATGTGGCATATGATGTTTCAAAACCAATGATTCCGGAGGGTCCAGGCTCTAGGACTATGAATC TTTCATCAAGAAAATCTGCAAAGGGAAAAATGAGGGATAATCTAAGTCAAAAGGCTGGTGACCTTCATGCTTCTAGGAAAGGAGCTAAAGATCTAAGGGT CTCTTTAGAAGATCAGAAGACCAACGCCAAGAATCATGGTCATGAATCCACCGTTAACAAAAGCAGGAGGAATGCAAGGAATTTTGTTGCAGTGATGAGG AAGTCTCTACCAGCGCTAAAGAGGGTGAGCCATGCAGATGCAAGTAATGCAAAGGAAAATGATGGAATCTCTAAGGAAACTAATAATATTAGTGAGTTTC CTGTTAAGGTTAAAGTGAGTAAGAAAGTAGTACCTCAGGCGGGCATGGGTAGGAGACATCTATGGAGAAATAGAGTGAGTGATGGCTTCATATTAATGGC CCCTAGGGATCAAAATAATGCTGAAGTTCTTGTATCCAGAAAATCTGTCAGGCCAATAATAAAGACTGAAATCAATGCTTCCGGTCACCATAAGACATCA AGATCAAAGTGCATCTCTAGTTTGAACAAATCCAAGTCCGTTGCTCCTATATCATCAAAGAAAAAAAAACATGTGACATCTTTCCCAGAAAACATGCCCT TGGTGATTGCCAATGAAGTTACTCAAGGAGAACCTTCATCTGACAACAACAAGATGTCAAGTGCTAATCACAAATCAGATGTCATCACCATAGGAAAATC AAGTCGAAGGAGATCTTATACATCGTTATTAATGACAAGATCAAAGTTACTAGAGGAACATGGTGAAGTTATGGAGCAGGAAAATCTACCAAGTATAGAT GATACTTCCAATCAACTGGAAGTTGCTGAATATGTTGACGCGATATATAAGTACTATTGGATTTTGGAGGTGCAGAATTCATCTCTGGAAAATTACATGG CAATTCAAACAGACATTACACCTCAAATGCGGGGCATAGTTATCAACTGGCTAATTGAAGTACACTTTAAATTTGAATTAATGCCGGAAACACTTTATCT TATGGTCACATTGTTAGATCGATACCTATCTCAAGCCCAAATTAAGAAGAATGAACTGCAGTTGGTTGGTCTTACAGCACTGTTTCTGGCATCAAAATAT GAAGATTTTTGGCATCCTAGGATCAAAGATTTAATTAGCATCTCAGCAGAGTCGTACTCAAGAGACCAAATGCTTCTAATGGAGAAGCTTTTACTGAAGA AGTTGAAGTTTCGTCTAAATGAGCCGACTCCATATGTTTTCATGTTAAGGTTTCTCAAGGCTGCTCAATCAGAGATGAAGCTTGAGCATTTAGCATTCTA CCTCATTGAGCTCTGCTTGGTTGAATACAAAGCTTTAAAGTTCAAACCTTCAATGCTATGTGCGTCAGCTATCTATGTTGCACGGTCTACCTTGCAAATG GTTCCAGCTTGGACTCCTCTGCTTGCCAGACACGCACATTATCAAGTCTCCCAAATGAGGGACTGTGCTGAGATGATATTGAGATTTCAAAAGGCTGCAA GAACATCACAATTGAGAGTCACATATGAGAAGTACATGAGGCCTGATCTCAGTGGTGTTGCAGCAATAAAACCCTTGAGTGAACTTCCGCTTTGA
AA sequence Show only first row Show all	>Potri.008G083200.6 pacid=42806758 polypeptide=Potri.008G083200.6.p locus=Potri.008G083200 ID=Potri.008G083200.6.v4.1 annot-version=v4.1 MVAAKGKVSVGMNRVAEDAHTCRTGFRTFKVYSENEKNKDAASIKSARDSFLPARRIPNKGYPPANASDSKGSLKIAGKNNCKHDNSGLTVNQNVRRKAL ADVSNVQSGNARDVAYDVSKPMIPEGPGSRTMNLSSRKSAKGKMRDNLSQKAGDLHASRKGAKDLRVSLEDQKTNAKNHGHESTVNKSRRNARNFVAVMR KSLPALKRVSHADASNAKENDGISKETNNISEFPVKVKVSKKVVPQAGMGRRHLWRNRVSDGFILMAPRDQNNAEVLVSRKSVRPIIKTEINASGHHKTS RSKCISSLNKSKSVAPISSKKKKHVTSFPENMPLVIANEVTQGEPSSDNNKMSSANHKSDVITIGKSSRRRSYTSLLMTRSKLLEEHGEVMEQENLPSID DTSNQLEVAEYVDAIYKYYWILEVQNSSLENYMAIQTDITPQMRGIVINWLIEVHFKFELMPETLYLMVTLLDRYLSQAQIKKNELQLVGLTALFLASKY EDFWHPRIKDLISISAESYSRDQMLLMEKLLLKKLKFRLNEPTPYVFMLRFLKAAQSEMKLEHLAFYLIELCLVEYKALKFKPSMLCASAIYVARSTLQM VPAWTPLLARHAHYQVSQMRDCAEMILRFQKAARTSQLRVTYEKYMRPDLSGVAAIKPLSELPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	0	1
AT3G53320			unknown protein		Potri.016G085600 [exp]	1.00	0.9460
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.010G202100 [exp]	13.71	0.9185
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	15.36	0.8677
AT3G27350			unknown protein		Potri.001G336300 [exp]	16.97	0.9169
AT1G16070	TUB	AtTLP8	tubby like protein 8 (.1.2)		Potri.001G041400 [exp]	18.33	0.9104
AT4G17000			unknown protein		Potri.001G287800 [exp]	21.81	0.9062
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	21.90	0.9069
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	24.49	0.8628
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	26.55	0.9092
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Potri.016G142800 [exp]	27.85	0.9041	CDC2.2,CDC2.4

Compare expression of checked genes

Potri.008G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.