Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12760 415 / 2e-148 unknown protein AT1G15860 109 / 5e-29 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G28970 96 / 3e-23 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112200 [exp] 112 / 4e-30 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 110 / 2e-29 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 102 / 5e-26 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.004G122100 [exp] 97 / 2e-23 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 91 / 8e-22 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000875 [exp] 441 / 4e-159 AT3G12760 383 / 3e-136 unknown protein Lus10009599 [exp] 437 / 2e-157 AT3G12760 380 / 3e-135 unknown protein Lus10013742 [exp] 113 / 2e-29 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10039198 [exp] 110 / 2e-29 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 101 / 8e-26 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 98 / 2e-24 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10030685 [exp] 90 / 9e-21 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 89 / 2e-20 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10026216 [exp] 75 / 1e-16 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF03556 [poplar] [flax] Cullin_binding Cullin binding CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.008G083800.3 pacid=42807080 polypeptide=Potri.008G083800.3.p locus=Potri.008G083800 ID=Potri.008G083800.3.v4.1 annot-version=v4.1 ATGCACAAGTTAAATAGAGGCAACCGTGAGAAAGTCCAGCAGTTCATGAGTATAACTGGGACAAGCGAGAAGGTTGCTGTTCAGGCTTTGAAGGCTAGTG ATTGGCATCTAGAAGGAGCATTTGATGCGTTCTACAGCCAGCCTCAGTCTAGAACATATACTGATTCTAGACATTTGGAAGAGCTTTACAACAGATATAA AGATCCTTATGTTGATATGGTACTGGTTGATGGTATCACCATCCTTTGCAATGATCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTTTCATGG CACATGAAGGCTGCCACCATGTGTGAATTCTCCAAGCAGGAATTCATTGGTGGATTACAATCACTGGGGGTCGATTCTTTGGACAAGTTTCGTGAAAAAA TACCATATATGCGATCTGAGCTGATGGACGAACAGAAGTTTCGTGAAATATACAACTTTGCTTTTGGCTGGGCAAAAGAAAAGGGACAAAAATCGTTGGC ATTGGATACAGCAATTGGTATGTGGCAACTGCTGTTTGCTGAAAAACAGTGGCCTTTGGTGGATCACTGGTGCCAGTTCTTACAGGCTCAGCATAATAAA GCAATCTCGAGGGACACTTGGTCTCAACTTCTGGAGTTTGCCAGGACAGTAGACCCCACATTATCAAATTATGATGCTGAAGGTGCATGGCCCTATCTGA TTGATGAATTTGTTGAATATTTGAATGAGAATGGCATAATGCAAAAGGGTCGGTCAACTGAATGGAGCCAAAAACGATGA
AA sequence Show only first row Show all	>Potri.008G083800.3 pacid=42807080 polypeptide=Potri.008G083800.3.p locus=Potri.008G083800 ID=Potri.008G083800.3.v4.1 annot-version=v4.1 MHKLNRGNREKVQQFMSITGTSEKVAVQALKASDWHLEGAFDAFYSQPQSRTYTDSRHLEELYNRYKDPYVDMVLVDGITILCNDLQVDPQDIVMLVVSW HMKAATMCEFSKQEFIGGLQSLGVDSLDKFREKIPYMRSELMDEQKFREIYNFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPLVDHWCQFLQAQHNK AISRDTWSQLLEFARTVDPTLSNYDAEGAWPYLIDEFVEYLNENGIMQKGRSTEWSQKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12760			unknown protein		Potri.008G083800 [exp]	0	1
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.013G085700 [exp]	3.46	0.6422
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	5.29	0.6681
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	7.21	0.6139
AT3G29170			Eukaryotic protein of unknown ...		Potri.006G053300 [exp]	10.00	0.6019
AT5G37780		ACAM-1, TCH1, C...	TOUCH 1, calmodulin 1 (.1.2.3)		Potri.015G032600 [exp]	10.09	0.6017	ACCAL.6
AT1G75440		UBC16	ubiquitin-conjugating enzyme 1...		Potri.005G118600 [exp]	14.73	0.6009	Pt-UBC17.2
AT5G16940			carbon-sulfur lyases (.1.2)		Potri.017G132500 [exp]	15.16	0.5540
AT2G34450			HMG-box (high mobility group) ...		Potri.004G131400 [exp]	15.87	0.5753
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.013G158400 [exp]	16.18	0.6780	Pt-EIF2.3
AT1G27290			unknown protein		Potri.003G170300 [exp]	29.34	0.5299

Compare expression of checked genes

Potri.008G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.