Plant FIBer expression Database

Potri.008G084100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16290 569 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G172300
[exp]
755 / 0 AT1G16290 567 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036958
[exp]
627 / 0 AT1G16290 561 / 0.0 unknown protein
Lus10037104
[exp]
627 / 0 AT1G16290 558 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0037 Lysozyme PF01464 SLT Transglycosylase SLT domain
Representative CDS sequence
>Potri.008G084100.1 pacid=42808360 polypeptide=Potri.008G084100.1.p locus=Potri.008G084100 ID=Potri.008G084100.1.v4.1 annot-version=v4.1
ATGGCTGCCAGCTTCTATTATTGGAATGATTGCGTTGATGTCCAGGACATGGAAGCAATGTGGCGGGAACCTGAAGTTAGCACGGAATGGTTAGATGCTG
GAGAGACTAAAGGAAATAAAGTTCACCTTTCACGGGATCCTGATGGAGAGCCTTATTTGACGCAGACTGAGATGAAGGCTGTTGCTGATATTATTGTCCG
TAGACATTTTGATTCACAAGTACACCCGGACATGATATGTGCTATAGCTGAACTTGCAAGTGACAGACAGCCCCTCTCTACGAGGTGGTATGATAAAAAA
ACAAAGGAAACAGCCCTGGGGATCATGCAAATTTTACCAAAAACAGCAGAGTGGCTGGTCAGAGACTTAGGTTATCGGGCGTATGAAGTAGAAGGGAATC
CAGAAATGCTTTGTCGACCTTTTGTTAGCGTTTATTTTGGTGCTGCTTATCTTAAATGGCTATCGAACTTTGAGAAAAAAGTAAGAAGTGAAGAGTTCAT
AGTTAGGGCGTATGACGGCGGCCCTAAAAAAGCAACCCACAAATCGACTTTGCCATATTGGAAAAGATACCTTTGTGTCAAAGAAAGTCTCCCATCCAGA
AGGTTTGTCAGTCCTTCAGTAAACAGTGCTTGTTCTTCAACTGCTCCAGCTGCACCTTCTTCACAAGACACAGGTTTTGTTTATATATACTGGGACTCTA
AAGCTTCCCTGGAAGACATGCAAGAGATGTGGAGTCATTCTGAAGTCGCAGAGGAGTGGACAAATTCTGGAGAAAAAAGAGGAAAGGTGCGCTTTTCACA
TGATCAGAACAAGAGACCTTATCTATCCCGGGTAGAAATGAAGGCTGTTGCAGACATAATTCTTTCAAAGCACTTCAGCACAAGGGGTGTTAAGCCTTCA
GTCCTTTGTGCTCTTGCTGAGATGGTTAGCATGCGTTTTGTTAACGGGGTTGGACCGCGAACTGGATTAATGGGGATCGACTACTCTACAGCTTTCTGGC
TTTACATGGAGTTGGGTTATAGGGCTTACAGAGTAGATTCTGTTGACGATATGACCAAGCCATTTGTGTCTGTGTACTTCGGTGCAGCTTATTTGGCTTG
GTTATCCGAATATGAAGGGAGGGAAAGAACTCCACAGTTTGTCGTTCCAGCTTATCTTTCTGGGCCAAAGAACGTGAACCGTCAAGAGTCTGGTCCCCTT
TGGCTCAAATTCGAGCAAGCTTTGAGCAATTACGAAGACATAAAGAGGGATCCTGGAAATTGCACCATCTTGTAA
AA sequence
>Potri.008G084100.1 pacid=42808360 polypeptide=Potri.008G084100.1.p locus=Potri.008G084100 ID=Potri.008G084100.1.v4.1 annot-version=v4.1
MAASFYYWNDCVDVQDMEAMWREPEVSTEWLDAGETKGNKVHLSRDPDGEPYLTQTEMKAVADIIVRRHFDSQVHPDMICAIAELASDRQPLSTRWYDKK
TKETALGIMQILPKTAEWLVRDLGYRAYEVEGNPEMLCRPFVSVYFGAAYLKWLSNFEKKVRSEEFIVRAYDGGPKKATHKSTLPYWKRYLCVKESLPSR
RFVSPSVNSACSSTAPAAPSSQDTGFVYIYWDSKASLEDMQEMWSHSEVAEEWTNSGEKRGKVRFSHDQNKRPYLSRVEMKAVADIILSKHFSTRGVKPS
VLCALAEMVSMRFVNGVGPRTGLMGIDYSTAFWLYMELGYRAYRVDSVDDMTKPFVSVYFGAAYLAWLSEYEGRERTPQFVVPAYLSGPKNVNRQESGPL
WLKFEQALSNYEDIKRDPGNCTIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16290 unknown protein Potri.008G084100
[exp]
0 1
AT3G23090 TPX2 (targeting protein for Xk... Potri.008G162800
[exp]
2.00 0.9248
AT3G17900 unknown protein Potri.008G194632
[exp]
2.44 0.8814
AT5G47180 Plant VAMP (vesicle-associated... Potri.001G152100
[exp]
2.64 0.8778
AT3G56250 unknown protein Potri.013G083700
[exp]
3.16 0.9059
AT3G15480 Protein of unknown function (D... Potri.001G403500
[exp]
4.79 0.8442
AT2G47500 P-loop nucleoside triphosphate... Potri.005G021100
[exp]
5.19 0.9021
AT5G47635 Pollen Ole e 1 allergen and ex... Potri.006G005600
[exp]
6.00 0.8991
AT5G16800 Acyl-CoA N-acyltransferases (N... Potri.019G050700
[exp]
6.70 0.8920
AT3G04810 ATNEK2 NIMA-related kinase 2 (.1.2) Potri.002G049400
[exp]
7.34 0.8623
AT2G27060 Leucine-rich repeat protein ki... Potri.009G159101
[exp]
9.16 0.8590

Potri.008G084100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.