Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56190 768 / 0 Phosphoglycerate kinase family protein (.1.2) AT3G12780 760 / 0 PGK1 phosphoglycerate kinase 1 (.1) AT1G79550 689 / 0 PGK phosphoglycerate kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171500 [exp] 866 / 0 AT1G56190 769 / 0.0 Phosphoglycerate kinase family protein (.1.2) Potri.008G084400 [exp] 685 / 0 AT1G79550 717 / 0.0 phosphoglycerate kinase (.1.2) Potri.010G171600 [exp] 675 / 0 AT1G79550 718 / 0.0 phosphoglycerate kinase (.1.2) Potri.016G091800 [exp] 185 / 2e-51 AT1G56190 182 / 4e-51 Phosphoglycerate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031168 [exp] 753 / 0 AT3G12780 758 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031744 [exp] 751 / 0 AT3G12780 757 / 0.0 phosphoglycerate kinase 1 (.1) Lus10031743 [exp] 684 / 0 AT1G79550 715 / 0.0 phosphoglycerate kinase (.1.2) Lus10031167 [exp] 603 / 0 AT1G79550 621 / 0.0 phosphoglycerate kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00162 [poplar] [flax] PGK Phosphoglycerate kinase
Representative CDS sequence Show only first row Show all	>Potri.008G084500.1 pacid=42808071 polypeptide=Potri.008G084500.1.p locus=Potri.008G084500 ID=Potri.008G084500.1.v4.1 annot-version=v4.1 ATGGCCTCTGCCACAGCACCAACAACTCTATCTCTCCTCAAAACAGCCGCCGCCTCCACCTCCACTTCTGCCCGTGCCTCCCTTCTCCCAGTCTCCACCT CTGGCCTCCGCACAACCAGCCTCCGTGGTCTTGGTTTCTCTGCTGCAGACCCATTGTTTAGTTCTCATGTGGTGTCCAAAATCCGATCTTTCAAGTCAAA TGGCAGAGCACCAAGAGCTGTGGTGTCTATGGCAAAGAAGAGTGTGGGTGACTTGACTGCTGCTGACTTGAAAGGGAAGAAAGTGTTTGTTAGAGCTGAT TTGAATGTGCCTCTTGATGAGAATCAGAAAATTACTGATGATACTAGAATTAGAGCCGCTGTTCCTACTATTAAATATTTGATTTCAAAAGGGGCCAAAG TTATTCTTTCTAGTCATTTGGGACGACCAAAAGGTGTAACTCCAAAATTCAGCTTGGCACCTCTTGTTCCCCGGTTATCTGAACTCCTTGGAATTCAGGT TGTGAAAGCTGATGATTGCATTGGTCCAGAGGTAGAAAAGTTGGTTGCTTCACTTCCCGAGGGTGGTGTTCTTCTTCTTGAAAATGTCAGGTTTTACAAG GAAGAAGAGAAGAACGAACCTGAATTCGCAAAGAAGCTTGCTTCCATGGCAGATCTTTATGTAAATGATGCATTTGGAACTGCACATAGAGCACACGCCT CAACTGAGGGAGTCACGAAATTCTTGAAACCATCTGTTGCTGGTTTCCTCTTGCAGAAGGAGCTGGACTACCTTGTTGGGGCAGTTTCAAACCCAAAGAG GCCATTTGCTGCCATTGTGGGTGGTTCTAAGGTCTCATCGAAGATTGGAGTCATTGAGTCACTCCTGGAGAAGTGTGATATCCTCCTTTTGGGTGGAGGT ATGATTTTCACATTTTACAAGGCTCAAGGCCTCGCAGTAGGTTCATCCTTGGTTGAGGAAGATAAGCTTGATTTGGCGACCACACTACTTGAGAAGGCCA AGGCAAAAGGAGTGTCTCTTTTGCTACCTAGTGATGTGGTAATTGCAGACAAGTTTGCTCCTGATGCAAATAGCAAGACTGTGCCAGCATCAGCCATCCC AGATGGTTGGATGGGACTGGATATTGGACCAGAATCTGTGAAAACATTCAGTGAGGCTTTGGGAACCACCCAAACTGTCATCTGGAATGGACCCATGGGA GTGTTTGAGTTTGAGAAGTTTGCGAATGGAACAGAGGCCATTGCAAAGAAGCTTGCTGAGCTTAGTGGCAAGGGAGTTACAACTATTATTGGAGGTGGAG ATTCTGTTGCAGCTGTAGAAAAAGTAGGAGTTGCTGATGTCATGAGCCACATATCAACTGGTGGTGGTGCCAGCTTGGAGTTGTTGGAAGGGAAAGAGCT ACCAGGTGTCCTTGCTCTTGACGAAGTCGAACGAGTTGCTGTGTAG
AA sequence Show only first row Show all	>Potri.008G084500.1 pacid=42808071 polypeptide=Potri.008G084500.1.p locus=Potri.008G084500 ID=Potri.008G084500.1.v4.1 annot-version=v4.1 MASATAPTTLSLLKTAAASTSTSARASLLPVSTSGLRTTSLRGLGFSAADPLFSSHVVSKIRSFKSNGRAPRAVVSMAKKSVGDLTAADLKGKKVFVRAD LNVPLDENQKITDDTRIRAAVPTIKYLISKGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYK EEEKNEPEFAKKLASMADLYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGG MIFTFYKAQGLAVGSSLVEEDKLDLATTLLEKAKAKGVSLLLPSDVVIADKFAPDANSKTVPASAIPDGWMGLDIGPESVKTFSEALGTTQTVIWNGPMG VFEFEKFANGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVLALDEVERVAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56190			Phosphoglycerate kinase family...		Potri.008G084500 [exp]	0	1
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Potri.015G104500 [exp]	1.41	0.9821
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	1.73	0.9861	Pt-RPL27.5
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	2.44	0.9796
AT1G56190			Phosphoglycerate kinase family...		Potri.010G171500 [exp]	2.82	0.9776	Pt-PGK1.1
AT1G60950		FED A, ATFD2, F...	FERREDOXIN 2, 2Fe-2S ferredoxi...		Potri.004G218400 [exp]	5.47	0.9768	PETF.3
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.006G137500 [exp]	5.74	0.9730	Pt-PRXQ.1
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	7.74	0.9758	gdcH3,Pt-GDCH.3
AT4G28660		PSB28	photosystem II reaction center...		Potri.002G256400 [exp]	8.06	0.9716
AT1G32080		AtLrgB	membrane protein, putative (.1...		Potri.003G099600 [exp]	9.48	0.9703
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.005G063300 [exp]	10.39	0.9743

Compare expression of checked genes

Potri.008G084500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.