Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16280 616 / 0 SWA3, AtRH36 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) AT5G60990 343 / 1e-113 DEA(D/H)-box RNA helicase family protein (.1) AT4G16630 242 / 2e-71 DEA(D/H)-box RNA helicase family protein (.1) AT5G65900 215 / 1e-62 DEA(D/H)-box RNA helicase family protein (.1) AT2G47330 216 / 4e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 216 / 5e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G20920 216 / 7e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G55150 208 / 5e-61 DEA(D/H)-box RNA helicase family protein (.1) AT1G77030 213 / 1e-60 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT3G18600 206 / 1e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068800 [exp] 344 / 5e-114 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 322 / 2e-105 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 315 / 1e-102 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G241300 [exp] 247 / 1e-73 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.013G158000 [exp] 218 / 2e-64 AT1G55150 322 / 3e-104 DEA(D/H)-box RNA helicase family protein (.1) Potri.019G130900 [exp] 217 / 5e-64 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G063600 [exp] 218 / 1e-62 AT3G16840 782 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G061050 [exp] 209 / 2e-62 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G257400 [exp] 220 / 3e-62 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006326 [exp] 666 / 0 AT1G16280 673 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10029596 [exp] 660 / 0 AT1G16280 674 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10031761 [exp] 348 / 9e-116 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 342 / 3e-113 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10042754 [exp] 239 / 2e-70 AT1G16280 983 / 0.0 SLOW WALKER 3, Arabidopsis thaliana RNA helicase 36, RNA helicase 36 (.1) Lus10004404 [exp] 224 / 5e-65 AT3G16840 874 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 216 / 8e-64 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 215 / 1e-63 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015977 [exp] 213 / 1e-62 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 214 / 2e-62 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G084700.3 pacid=42806196 polypeptide=Potri.008G084700.3.p locus=Potri.008G084700 ID=Potri.008G084700.3.v4.1 annot-version=v4.1 ATGGAGGAGCAGCAACAAGAAAAAACACATGTAGTTGACAGCAACTTCCCACTCTTCTCTAAAACCCCTAAACGCCCCAAACTCCAGAAAACCCAAAACC CTGATGAAAGCCCTGAAATCCCCAAACTCGAAAAAGAAGCCTCCTCAAACCCTAGTAACCCCGACTCCGCCGCCGCCAAAACCACTTTGTTTTCTGACCT TGGCCTCTCCGAATGGGCACTTCAAACCTGCAAAGAACTTGGTATGAAGAACCCAACACAAGTACAATCCCACTGCATCCCCAAAATCCTCTCAGGCCGG GATGTTTTAGGCCTGGCCCAAACTGGGAGCGGCAAGACGGCAGCTTTTGCTTTGCCGATCCTCCACCGCTTAGCTGAAGACCCATTTGGGGTTTTTGCTC TTGTTATAACACCAACCAGAGAATTGGCGTACCAATTGGCAGAGCAGTTTCGTGCTTTCGGTTCTTGTTTGCATTTGAGGTGTGCTGTTGTTGTTGGGGG TATGGATTTGTTGACTCAAGCTAAAACCTTGATGGGGAGACCCCATGTTGTTATTGCTACGCCGGGAAGAATTAAGGTTCTGTTGGAGAATCCTGATATT TCTCCTGTTTTCTCTCGAACCAAGTTTCTAGTTTTGGATGAAGCTGATAGGTTGATTGATGTTGGATTTCAAGAGGAATTAAGAGTGGTGTTCAAGTGCT TGCCGAAAAGTAGGCAAACTTTGCTTTTTTCTGCCACAATGACAAGTGAATTGCAAACGTTGCTTGAGCTTTCTGAAAATAAGGCTTACTTTTATGAGGA ATATGAGGGTTTCAAGACGGTTGACACTCTTAACCAGCAGTATATTCAGATGCCCAAGAATGTGAAGGAGGTTTATCTTGTTTACATTTTGTCCAAAATG GAAGAAATGGGAATTCGATCTGCCATAATATTTGTCTCTGCCTGCAGCACTTGTCGCCTTTTGAGTTCATTACTGAAAGAGCTTGATCATGAACCTGCAA CATTGTACTCACTTGAATCCCAGTCGGCTAGGCTTGCTTCATTACATCGGTTCAAATCGGGACAAGCTTCTATATTAATTGCTACCGATCTTGCTAGTCG TGGTTTGGACATTCCTACTGTTGATCTTGTTATCAATTATGATCTTCCAAGGGATCCTACAGATTATGTTCATCGTGTAGGGCGTACTGCAAGAGCAGGC AGGGAAGGGCTGGCTGTGAGTTTAGTTGCTCAGCATGATGGAAAACTCATGAAAGCTATAGAAGCTGAAGTTGGAAAACAGTTCGAGAAATTTGAGTGTA AAGAGAATGAGGTCCTTTCCGATATTACGAAGGTTTACAAGGCTAGACGCGTCGCAAAAATGAAGATGATGGATGACGGCTTTGATGAGCTAGTAAAAGA ACGGAAAAAACAGAAACAGAAATCCCTAGCAGAGAAGGGATTGTTGAAGAATAAAAGGAGAAAGAGGAAAAGTAAGGATATGTTGAGCTGA
AA sequence Show only first row Show all	>Potri.008G084700.3 pacid=42806196 polypeptide=Potri.008G084700.3.p locus=Potri.008G084700 ID=Potri.008G084700.3.v4.1 annot-version=v4.1 MEEQQQEKTHVVDSNFPLFSKTPKRPKLQKTQNPDESPEIPKLEKEASSNPSNPDSAAAKTTLFSDLGLSEWALQTCKELGMKNPTQVQSHCIPKILSGR DVLGLAQTGSGKTAAFALPILHRLAEDPFGVFALVITPTRELAYQLAEQFRAFGSCLHLRCAVVVGGMDLLTQAKTLMGRPHVVIATPGRIKVLLENPDI SPVFSRTKFLVLDEADRLIDVGFQEELRVVFKCLPKSRQTLLFSATMTSELQTLLELSENKAYFYEEYEGFKTVDTLNQQYIQMPKNVKEVYLVYILSKM EEMGIRSAIIFVSACSTCRLLSSLLKELDHEPATLYSLESQSARLASLHRFKSGQASILIATDLASRGLDIPTVDLVINYDLPRDPTDYVHRVGRTARAG REGLAVSLVAQHDGKLMKAIEAEVGKQFEKFECKENEVLSDITKVYKARRVAKMKMMDDGFDELVKERKKQKQKSLAEKGLLKNKRRKRKSKDMLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	2.82	0.8815
AT5G59980			Polymerase/histidinol phosphat...		Potri.009G025800 [exp]	3.46	0.8817
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	3.87	0.8853
AT5G57120			unknown protein		Potri.006G073100 [exp]	4.24	0.8825
AT4G11790			Pleckstrin homology (PH) domai...		Potri.001G111100 [exp]	6.63	0.8132
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G087500 [exp]	6.92	0.8095
AT5G22100			RNA cyclase family protein (.1...		Potri.001G216400 [exp]	8.00	0.8233
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	8.94	0.8358
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	9.59	0.8116
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	9.79	0.8609

Compare expression of checked genes

Potri.008G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.