Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	DIM.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19820 994 / 0 CBB1, EVE1, DW1, DIM1, DWF1 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) AT5G56970 48 / 1e-05 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G41510 45 / 0.0002 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 44 / 0.0002 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170000 [exp] 1144 / 0 AT3G19820 992 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Potri.016G040300 [exp] 52 / 9e-07 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.006G221000 [exp] 43 / 0.0007 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.011G159600 [exp] 42 / 0.0008 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010215 [exp] 747 / 0 AT3G19820 711 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10017412 [exp] 605 / 0 AT3G19820 583 / 0.0 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10017413 [exp] 233 / 2e-74 AT3G19820 216 / 2e-68 ENHANCED VERY-LOW-FLUENCE RESPONSES 1, DWARF 1, DIMINUTO 1, DIMINUTIA, CABBAGE 1, cell elongation protein / DWARF1 / DIMINUTO (DIM) (.1), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.2), cell elongation protein / DWARF1 / DIMINUTO (DIM) (.3) Lus10031013 [exp] 46 / 9e-05 AT3G47930 932 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Lus10038446 [exp] 45 / 0.0001 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10002688 [exp] 43 / 0.0006 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G084800.6 pacid=42806312 polypeptide=Potri.008G084800.6.p locus=Potri.008G084800 ID=Potri.008G084800.6.v4.1 annot-version=v4.1 ATGTCCGATCTTGAGGCCCCCTTGCGCCCGAAGAGGAAGAAGGTGTGGGTAGACTATTTTGTGCAGTTCCGATGGATTTTAGTTATTTTCGTCGTTCTCC CAATCTCCTTCACCCTTTACTTTCTCACTTATCTCGGGGATGTCAAATCAGAGATGAAGTCCTACAAACAGCGTCAAAAGGAACATGATGAAAATGTTAA AAAAGTTGTGAAACGTCTTAAAGAGAGGAATCCGTCAAAGGATGGTCTTGTCTGCACTGCTCGTAAACCCTGGATTGCTGTTGGAATGCGAAATGTTGAC TACAAACGGGCTCGGCACTTCGAAGTTGATTTATCAGCTTTTCGTAATATCCTTGAAATTGATAAGGAGAGAATGATTGCTAGAGTTGAGCCTCTTGTAA ATATGGGTCAGATCAGCAGGGCAAGTGTCCCAATGAATCTTTCTCTTGCAGTCGTTGCAGAACTTGATGATCTCACTGTTGGTGGGCTCATTAATGGTTA TGGGATTGAAGGAAGCTCTCATATCTATGGCTTGTTCTCCGACACTGTTGTGGCATATGAGATTGTTTTGGCAGATGGTCAGGTTGTTAGAGCTACCAAG GACAATGAATACTCTGATCTTTTCTATGCCATCCCCTGGTCTCAGGGAACACTTGGGCTTCTTGTCTCTGCTGAGATCAAGCTTATTCCTATTAAGGAAT ACATGAGGCTGACCTACAAACCTGTAGTGGGTAATCTGAAAGAACTTGCGCAGGCCTATATAGACTCTTTTGCACCCAGAGATGGAGATCAGGATAACCC AGAGAAGGTTCCAGACTTTGTGGAGACTATGATTTATAACTCTACCGAAGGTGTGATGATGACTGGGAGATATGCCTCCAAAGAAGAGGCCAAGAAGAAG GGAAATGTGATTAACAATGTTGGTTGGTGGTTTAAACCGTGGTTCTATCAGCATGCGCAGACAGCCCTAAAGAAAGGAGAGTTTGTGGAGTACATTCCAA CCAGAGAATATTATCACAGGCACACAAGGTGTTTGTACTGGGAGGGGAAGCTTATACTTCCATTCGCTGATCAATGGTGGTTTAGATTTCTCTTAGGCTG GATGATGCCTCCAAAGGTTTCTCTTCTCAAGGCCACTCAAGGTGAAGCAATCCGAAACTATTACCATGAGATGCATGTCATTCAGGACATGCTTGTTCCT CTTTACAAGGTTGGGGATGCCCTTGAATGGGTCCACCAAGAGATGGAGGTATACCCCCTTTGGCTCTGTCCGCACAGGTTGTTCAAGCTCCCTGTGAAAA CTATGGTGTATCCAGAGCCAGGATTCGAGCATCAGCACAAACAGGGAGATACATCCTATGCTCAGATGTACACTGATGTCGGGGTGTATTATTCGCCCGG ACCTGTGCTGAGGGGTGAGGTGTTTGATGGTGCAGATGCTGTTCGTAGAATGGAGGACTGGTTGATAGAAAACCGTGGCTTCCAGCCACAGTATGCAGTG TCCGAGCTAAGTGAGAAGAAATTCTGGAGGATGTTTGATGGTGACCTCTATGAACACTGCAGGAAGAAATATGGAGCTGTGGGAACCTTCATGAGCGTGT ACTACAAATCCAAGAAAGGAAGGAAGACAGAGAAGGAGGTGCAGGAAGCTGAACAAGCCCACCTTGAGACTGCTTATGCAGAGGCTACTTAA
AA sequence Show only first row Show all	>Potri.008G084800.6 pacid=42806312 polypeptide=Potri.008G084800.6.p locus=Potri.008G084800 ID=Potri.008G084800.6.v4.1 annot-version=v4.1 MSDLEAPLRPKRKKVWVDYFVQFRWILVIFVVLPISFTLYFLTYLGDVKSEMKSYKQRQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVD YKRARHFEVDLSAFRNILEIDKERMIARVEPLVNMGQISRASVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK DNEYSDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMRLTYKPVVGNLKELAQAYIDSFAPRDGDQDNPEKVPDFVETMIYNSTEGVMMTGRYASKEEAKKK GNVINNVGWWFKPWFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPFADQWWFRFLLGWMMPPKVSLLKATQGEAIRNYYHEMHVIQDMLVP LYKVGDALEWVHQEMEVYPLWLCPHRLFKLPVKTMVYPEPGFEHQHKQGDTSYAQMYTDVGVYYSPGPVLRGEVFDGADAVRRMEDWLIENRGFQPQYAV SELSEKKFWRMFDGDLYEHCRKKYGAVGTFMSVYYKSKKGRKTEKEVQEAEQAHLETAYAEAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	0	1	DIM.2
AT2G25270			unknown protein		Potri.018G023200 [exp]	2.64	0.9215
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	4.24	0.9000
AT2G19880			Nucleotide-diphospho-sugar tra...		Potri.006G164864 [exp]	4.47	0.9093
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	7.41	0.9069	Pt-MKK6.1
AT1G64960		HEB1	hypersensitive to excess boron...		Potri.007G055400 [exp]	10.09	0.9178
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.010G040800 [exp]	11.61	0.8770
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	14.49	0.8902
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.009G040200 [exp]	17.66	0.9097
AT3G07010			Pectin lyase-like superfamily ...		Potri.002G238800 [exp]	18.00	0.8528
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.003G183300 [exp]	23.04	0.8624

Compare expression of checked genes

Potri.008G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.