Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19830 787 / 0 NTMCTYPE5.2 ,NTMC2T5.2 ,NTMC2TYPE5.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G50260 760 / 0 NTMCTYPE5.1 ,NTMC2T5.1 ,NTMC2TYPE5.1 N-terminal-transmembrane-C2 domain type 5.1 (.1.2) AT5G04220 80 / 2e-15 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 74 / 2e-13 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G14590 66 / 5e-11 NTMCTYPE6.2 ,NTMC2T6.2 ,NTMC2TYPE6.2 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT3G61050 64 / 3e-10 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G53590 63 / 6e-10 NTMCTYPE6.1 ,NTMC2T6.1 ,NTMC2TYPE6.1 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 61 / 1e-09 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT5G11100 60 / 3e-09 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 59 / 7e-09 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170300 [exp] 1135 / 0 AT3G19830 752 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 79 / 4e-15 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 79 / 5e-15 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 78 / 7e-15 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.014G072800 [exp] 77 / 1e-14 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.005G241700 [exp] 76 / 4e-14 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 74 / 2e-13 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 74 / 2e-13 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G134200 [exp] 71 / 1e-12 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029073 [exp] 838 / 0 AT3G19830 804 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10034197 [exp] 827 / 0 AT3G19830 813 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 89 / 3e-18 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10037993 [exp] 83 / 3e-16 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 82 / 7e-16 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 81 / 1e-15 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 81 / 1e-15 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017268 [exp] 80 / 3e-15 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10026192 [exp] 73 / 4e-13 AT1G53590 771 / 0.0 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 71 / 2e-12 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.008G085000.1 pacid=42806759 polypeptide=Potri.008G085000.1.p locus=Potri.008G085000 ID=Potri.008G085000.1.v4.1 annot-version=v4.1 ATGACTTCACAGTCTTCTCCGGCAAGCTTCAGTTCTTATCAAATTCTCCCTCTCCTCTGCCCTTGCAAATCCTTCCATCAAACCAACTACCCGTCACTTC CCTTCTCTAAAAGGAGGAGGAAAAAACTAATCACCGACCTCACACACCAAAATTTCAGAAGAAAGTTCTTAACTTTCCATGCTTGTGTCTTCCCAAACGA CACCAGAAATAGCAATGTAAACATTGATGAGCTTTCAAAGGGGACTAAGAGGTTTGTTTTCAAACGAATTGCTAATGAACTGGAGACCGGAGAACTATCC CAAGAGCCATCGATTTCGAACTTCACTGGTTTTCAAGAGGATCCTATCGTGGGAAAGCTAAGGACTCAATTGGGAGCGATACACCCGATACCTTCACCTC CAATTAATAGAAATATTGTTGGGTTATTTGTGTTTTTCTTTTTTGTGGGTGTTGTTTCTGATAAGGTATGGACTTCGAGGAAGAGAGAGAAAAGCAATGA GGAAGGGAAGCGTGCTGGGGCGTGGCCGCAAGTGCCCACCAGCTTTTCCTTGTTTCTGGAGAAGGATTTGCAGAGGAAAGAGTCCGTTGAGTGGGTTAAT ATGGTGCTAGGGAAGTTATGGAAGGTTTATAGAGGCGGGATTGAGAATTGGCTAGTTGGGCTATTGCAACCTGTTATTGATGATTTGAAGAAGCCTGATT ATGTTGAGAGAGTTGAAATCAAGCAATTCTCTCTAGGGGACGAGCCATTGTCCGTTAGGAACGTTGAGAGAAGAACTTCTCGCCGCGTCAATGATTTGCA GTATCAAATAGGTCTCAGATATACTGGTGGCGCTCGGATGCTTCTAATGCTATCGCTAAAATTTAGCATTATCCCCATTATGTTGCCAGTCAGTGTTAGA GATTTTGACATTGATGGTGAACTCTGGGTCAAACTGCGGTTGATACCAACAGAGCCATGGGTGGGAGCTGCTTCTTGGGCTTTTGTGTCACTTCCGAAGA TCAAATTTGAATTGTCGCCATTTCGTTTGTTCAATCTAATGGCAATTCCAGTTCTCTCATTGTTTCTGAAAAAACTTCTCACTGAGGATTTGCCTCGACT GTTTGTTCGTCCAAAGAAGATTGTTTTGGATTTTCAAAATGGAAAAGCGGTTGGGCCTGTTGCAAATGAATCAGGAGAAATGCAAGAAGGAAACGAGGAT TTTGTTGGAGAACTATCAGTGACTCTTGTAGATGCTCGAAAACTTTCCTATGTCTTCTTTGGTAAAACTGACCCTTATGTTATTCTGAGCCTGGGAGATC AAATTATGCGTAGTAAAAAGAACAGCCGAACCACCGTGATCGGCCGTCCTGGTGAGCCAATTTGGAACCAGGATTTTCATATGCTTGTTGCAAACCCCAG GAAACAAAAATTGAACATCCAAGTGAAAGACTCTCTTGGATTCACAGATTTAACTGTTGGCACTGGAGAGGTTGATCTGGGATCTCTGCAAGATACTGTA CCAACTGACAAGATTGTGGCTTTGCAAGGAGGTTGGGGATTGTTCAGAAAGGCTTCTTCTGGGGAGATACTTCTTCGACTAACTTATAAAGCATATGTTG AGGATGAAGATGATGACAAGTATGGGGTGGAGCCTGTTGATACAGGTGCTTCAGATGATGAGTTGTCTGATTCAGATGACTCAAATGCTATTTATGAGCC TAGTAGAAGGGATTCTTCTAATGAGATGGATAAAGAGTCATTTATGGGTGTTCTAGCAGCTTTAATTGTGAGTGAGGAATTTCAAGGAATTGTGGCATCT GATACTGGAAATAGCAAACTTTCAATTGATGCCTCAAGTCTTAATGCTGAATCAATGCCCTCGGATAGTAATAACAGTTCTGAAGGTTCTGCTGGATCAA TCTTAGTTTGGTTTGCAGTGATTACAAGCATATTAGTTCTAATTGCTGTCACTATGGATGGTTCAAGTTTTTTCAACCCCTGA
AA sequence Show only first row Show all	>Potri.008G085000.1 pacid=42806759 polypeptide=Potri.008G085000.1.p locus=Potri.008G085000 ID=Potri.008G085000.1.v4.1 annot-version=v4.1 MTSQSSPASFSSYQILPLLCPCKSFHQTNYPSLPFSKRRRKKLITDLTHQNFRRKFLTFHACVFPNDTRNSNVNIDELSKGTKRFVFKRIANELETGELS QEPSISNFTGFQEDPIVGKLRTQLGAIHPIPSPPINRNIVGLFVFFFFVGVVSDKVWTSRKREKSNEEGKRAGAWPQVPTSFSLFLEKDLQRKESVEWVN MVLGKLWKVYRGGIENWLVGLLQPVIDDLKKPDYVERVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFSIIPIMLPVSVR DFDIDGELWVKLRLIPTEPWVGAASWAFVSLPKIKFELSPFRLFNLMAIPVLSLFLKKLLTEDLPRLFVRPKKIVLDFQNGKAVGPVANESGEMQEGNED FVGELSVTLVDARKLSYVFFGKTDPYVILSLGDQIMRSKKNSRTTVIGRPGEPIWNQDFHMLVANPRKQKLNIQVKDSLGFTDLTVGTGEVDLGSLQDTV PTDKIVALQGGWGLFRKASSGEILLRLTYKAYVEDEDDDKYGVEPVDTGASDDELSDSDDSNAIYEPSRRDSSNEMDKESFMGVLAALIVSEEFQGIVAS DTGNSKLSIDASSLNAESMPSDSNNSSEGSAGSILVWFAVITSILVLIAVTMDGSSFFNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	0	1
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.001G218800 [exp]	2.00	0.8599
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	2.44	0.8749
AT5G66210		CPK28	calcium-dependent protein kina...		Potri.005G113600 [exp]	2.64	0.8847	CPK18
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	3.31	0.8169
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	4.47	0.8597
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	4.58	0.8337
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	6.32	0.8282
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	7.28	0.7518
AT2G43850			Integrin-linked protein kinase...		Potri.007G142100 [exp]	7.87	0.7444
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	8.36	0.8103

Compare expression of checked genes

Potri.008G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.