Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19870 1056 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012903 [exp] 1262 / 0 AT3G19870 1053 / 0.0 unknown protein Lus10030556 [exp] 1236 / 0 AT3G19870 1059 / 0.0 unknown protein Lus10008394 [exp] 97 / 9e-23 AT3G19870 71 / 2e-14 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G085300.1 pacid=42807281 polypeptide=Potri.008G085300.1.p locus=Potri.008G085300 ID=Potri.008G085300.1.v4.1 annot-version=v4.1 ATGAATCCACCAGATAAACCACTTCCAAAACCACTCTCTTCTCAAGACTGGGAATCCCTAATCGAGGATTTCCAACAAGGCGGTCCACGCCACCACAAAT GGACTGCACCACACCTACTCCAATCTCTCCTCGACCAAGCCTTCACTTCTCTCCTAAAAAAAGACTTCCCTCTCAAGCTTCCTCTCCTTCTCCTCCTCGA AGAATTCTCCGAAACGTTTTTCACTCATGAAACGCATCTCAATCGCCTCCTCGAATCTCTCCGCTCCGTTATACAATCACCCCTCGACGGCGTAACCATC TCGTATTATTTAAAAGAACAATTCATGGTAAGCACCACTTCGATTTTCGTAACCGTAAACGCGCTCGAGAAATTTCACGCGCGGTTCATTGAGGGTTTGG TTGAGCTTCTAGTGTTGGTCATTAACAGGCCAAATCACAGCATGGATAGGCAATCACGCGCGATTGCGTGCGAGTGTTTGCGGGAATTGGAGAAATGTTG GCCGTGCTTGTTGTCTAATATTGGTGGGCATTTATGGAGTTTGTGTCAAAATGAGAGAAGTCATGCTTGCCAATCTTACCTGTTGTTGTTTACTAGTGTT GTTTTTAATATTGTTAATACCAAGTTGAATGTTTCGATATTGAATACTTCGGTGCCTTTAGTTCCGTTTAACGTGCCGCAATGGGTTTTGTCTGGTGGGG ATGAGAATGGGATTGGGAGTAAAGAGGTGGTCGTGGGGTTGAATTATAAGGAGTTGAGGAGAGCTATGGCGTTTTTATTGGAGTCTCCGCAGGTTTTGAC ACCTAGTGGGATGATGGAGTTTTTAGGGATGGTAATGCCTATGGCTGTAGCTTTGGAGTTGCAAGCGTCGATGTTGAAAGTGCAGTTTTTTTGGATGATT TATTCGTTTGATCCGTTGTCGTGTCATGTTGTTTTGACGATGTATTCTCGTTTTCTGGATGTGTTTGATGGACAAGAGGGAGAGATTTTTTCTCGATTGT TGTTGATTTCGAAGGAGACACACCATTATTTGGTTTTTAGATTGCTTGCTCTTCATTGGTTGTTGGGGTTGTTAAGTAAATTGATGTTCAGTGGAGAGGT TGGGAAATATAAGTCAATTTTTGAGTTGGGTTTGAGGTTTTATCCAGCCGTGTTTGATCCACTTGCATTGAAAGCGTTGAAGCTGGATTTGCTTGCCTTC TACTCTATATGTCTTGATAGGTTGAAACTTGAGAGTTTTTCCGGTGAGGAGGTGGGTATTGGGAAATCTGCTGCTAAGCTGTTTGAAGATGGTCTGGTTT CTGTTTCGGCTTTCAAATGGTTGCCTCCTTGGAGTACAGAAACTGCCGTGGCTTTCCGTGCATTTCACAAGTTCTTGATAGGTGCCTCATCTCATTCTGA CAGTGATCCTTCCACCACTAGAACACTCATGGACTCTACCATCTTCCATACCTTGCAGGGGATGCTAGTGGACATGACATTGCAGTTTCAGAGATTGGTC CCTGTCATTGTTTCTTACACTGATCGCTTGTTAGGCTGTCAAAAGCATCGCTGGCTGGGAGAGCGCTTGCTTCAGACAGTTGATGAGCTTCTGCTTCCAA AAGTCAAAATAAACTATAAATTGTCTTCTTACCTGCCAATATTTGACAGAATTGCAGAAAACAGTACAATACCTCCCAGGGGATTGTTGGACCTACTTGA CAAGTTTATGGTTTTTCTTGTCGAGAAACATGGCCCTGATACAGGGCTGAAAACTTGGTCCCGGGGAAGTAAAGTTCTTGGCATTTGCCGAACTATGCTG ATGCACCACCATAGCTCTAGATTGTTCCTTGGGTTATCTCGCCTTCTTGCTTTTACATGTCTATATTTCCCTGATTTGGAGGTTCGTGACAATGCAAGGA TCTACCTGCGAATGCTGATCTGTATACCAGGAGTGAAGCTTCGAGACATACTGAACCTGGGGGAGCAACTCGGTAATTCTCCATCCTCACATTCCAGTTC TTTCTTCAATGTTCACTCTCCTCGACAGCATTATCAGAATCTCAAGAAATCCAGGAACATCTCAGCCTACATTCACATTGAGCGAACAAAACCACTGCTT GTTAAGCAAACCTGGTCCTTGTCCTTGTTACCTTTGGGTGATGGGAGTGCTAAAGCTGGTTATCTAGAGAGCATAAGGGATAGTGAACCTTTGGTTGATG TAAGAGATCTGAATGGCAATGAAAATTTGCTGACTGCCCCAGAAAATGAAAGAATCTATCAGTCTCAGGAGCCGTTACGCGTAATGGATTCAAAAATTTC GGAGATCTTAGAAATATTAAGGAGGCATTTCTCATGTATTCCTGATTTTAGGCACATGCCTGGGTTTAAGGTTAGAATATCCTGCCATTTGAGATTTGAA TCTGAGCCTTTCAATCATATATGGGGGGACAATTCACCTACTAGTCAGTTGGATGGAGTAGATGGTCTTCCTGCCATATATGCAACTGTCCTTAAATTTT CATCCTCGGCACCATATGGATCTATCCCATCATATCGCATACCTTGTCTTCTCGGTGAACCTCCCAGGAATGATGATATTTCCGGCCAGAGTGTTTCACT AGACATTGTTCCCATAGAAAATGGTGCCAGAGAAGAGGAAAGCTTCAGAGCTCCTGTAACAATTGATTTGGAACCACAGGAACCAACTCCTGGTCTAGTT GATGTTTCCATTGAAGCAAATGCAGAAAATGGTCAGGTCATCCGTGGTCAACTTCAAAGTATCACTGTAGGTATAGAGGACATGTTTCTCAAGGCTATTA TCCCATCTGACATTGCTGAGGATGAGATACCTGCTTATTATTCCCAGTTATTCAATGCTCTCTGGGAGGCGTGTGGTGCTCCTTCCAACATAGGGCGGGA GACATTCCAATTAAAGGGGCAGAAGGGTGTTGCAGCAATAAGCGGAACCCGATCAGTCAAGCTACTTGAAGTTCCTGCAGACTCTCTGATCAGGGCCACT GAGCAGTATCTGGCACCCTTTGTTGTTAGTGTGATTGGTGAACCACTTGTTAACATGGTGAAGGATGGGGGAATAATCTGCAACATCATATGGAAGGATT CTGCATCAGATTCCTTTCTTGAAAGCACCACGTCAGTTACTGGTTTAGAAAGAGGTCCCCTTCACCTTACCTATGGTGAAGATGATGAGAGTGGAAGTTC AATAAATACTAGTAAAAGAAACATGGGCTGCTTTCTTGTATTGATATTTCTTCCACCAAGGTTCCATCTCCTTCTCCAAATGGAAGTAAGTGATCTTTCA ACCTTGGTTCGAATTAGAACTGATTGCTGGCCATGCTTAGCTTATGTTGATGATTATCTGGAGGGTTTGTTTTTGGCATAG
AA sequence Show only first row Show all	>Potri.008G085300.1 pacid=42807281 polypeptide=Potri.008G085300.1.p locus=Potri.008G085300 ID=Potri.008G085300.1.v4.1 annot-version=v4.1 MNPPDKPLPKPLSSQDWESLIEDFQQGGPRHHKWTAPHLLQSLLDQAFTSLLKKDFPLKLPLLLLLEEFSETFFTHETHLNRLLESLRSVIQSPLDGVTI SYYLKEQFMVSTTSIFVTVNALEKFHARFIEGLVELLVLVINRPNHSMDRQSRAIACECLRELEKCWPCLLSNIGGHLWSLCQNERSHACQSYLLLFTSV VFNIVNTKLNVSILNTSVPLVPFNVPQWVLSGGDENGIGSKEVVVGLNYKELRRAMAFLLESPQVLTPSGMMEFLGMVMPMAVALELQASMLKVQFFWMI YSFDPLSCHVVLTMYSRFLDVFDGQEGEIFSRLLLISKETHHYLVFRLLALHWLLGLLSKLMFSGEVGKYKSIFELGLRFYPAVFDPLALKALKLDLLAF YSICLDRLKLESFSGEEVGIGKSAAKLFEDGLVSVSAFKWLPPWSTETAVAFRAFHKFLIGASSHSDSDPSTTRTLMDSTIFHTLQGMLVDMTLQFQRLV PVIVSYTDRLLGCQKHRWLGERLLQTVDELLLPKVKINYKLSSYLPIFDRIAENSTIPPRGLLDLLDKFMVFLVEKHGPDTGLKTWSRGSKVLGICRTML MHHHSSRLFLGLSRLLAFTCLYFPDLEVRDNARIYLRMLICIPGVKLRDILNLGEQLGNSPSSHSSSFFNVHSPRQHYQNLKKSRNISAYIHIERTKPLL VKQTWSLSLLPLGDGSAKAGYLESIRDSEPLVDVRDLNGNENLLTAPENERIYQSQEPLRVMDSKISEILEILRRHFSCIPDFRHMPGFKVRISCHLRFE SEPFNHIWGDNSPTSQLDGVDGLPAIYATVLKFSSSAPYGSIPSYRIPCLLGEPPRNDDISGQSVSLDIVPIENGAREEESFRAPVTIDLEPQEPTPGLV DVSIEANAENGQVIRGQLQSITVGIEDMFLKAIIPSDIAEDEIPAYYSQLFNALWEACGAPSNIGRETFQLKGQKGVAAISGTRSVKLLEVPADSLIRAT EQYLAPFVVSVIGEPLVNMVKDGGIICNIIWKDSASDSFLESTTSVTGLERGPLHLTYGEDDESGSSINTSKRNMGCFLVLIFLPPRFHLLLQMEVSDLS TLVRIRTDCWPCLAYVDDYLEGLFLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19870			unknown protein		Potri.008G085300 [exp]	0	1
AT1G04610		YUC3	YUCCA 3 (.1)		Potri.010G062400 [exp]	3.00	0.7353
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	4.35	0.7472
AT5G62440			Protein of unknown function (D...		Potri.013G021800 [exp]	10.58	0.7208
					Potri.005G163950 [exp]	13.19	0.7248
AT2G33170			Leucine-rich repeat receptor-l...		Potri.001G053400 [exp]	19.49	0.7157
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.006G138500 [exp]	19.79	0.7275	Pt-NPH4.2
AT3G24180			Beta-glucosidase, GBA2 type fa...		Potri.003G178000 [exp]	20.73	0.7266
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	27.45	0.6748
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.014G052600 [exp]	28.56	0.6775
					Potri.003G016275 [exp]	30.39	0.6718

Compare expression of checked genes

Potri.008G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.