Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50300 339 / 7e-115 TAF15 TBP-associated factor 15 (.1) AT5G58470 56 / 2e-08 TAF15b TBP-associated factor 15B (.1.2) AT5G16260 48 / 8e-06 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G67325 47 / 8e-06 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT3G54230 44 / 0.0003 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G170700 [exp] 447 / 6e-157 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.001G281300 [exp] 56 / 3e-08 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2) Potri.008G078200 [exp] 50 / 1e-06 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G076600 [exp] 50 / 2e-06 AT5G58470 199 / 4e-59 TBP-associated factor 15B (.1.2) Potri.010G203200 [exp] 47 / 1e-05 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.010G179000 [exp] 46 / 3e-05 AT5G16260 533 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G056000 [exp] 45 / 3e-05 AT1G67325 340 / 5e-118 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.003G172500 [exp] 43 / 0.0003 AT1G67325 374 / 3e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030555 [exp] 362 / 2e-122 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10012902 [exp] 358 / 4e-122 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10042268 [exp] 57 / 2e-08 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10026388 [exp] 56 / 3e-08 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10037029 [exp] 45 / 4e-05 AT1G67325 276 / 2e-92 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10006412 [exp] 42 / 0.0004 AT1G67325 374 / 1e-130 Ran BP2/NZF zinc finger-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.008G085400.1 pacid=42807218 polypeptide=Potri.008G085400.1.p locus=Potri.008G085400 ID=Potri.008G085400.1.v4.1 annot-version=v4.1 ATGGCAAGCTATGCAGGGAAAGGAGACCCTTCTAATGGGACTATCTATATTAGTAATTTACCTGAAGGGACCGATGACATTATGTTGGCTGGATATTTTG GCACTATTGGGTTGTTAAAGAAGGACAAGAGAACTGGTCGACCTAAGATATGGCTGTACCGTGACAAAATGACGAATGAGCCTAAGGGTGATGCCACAGT TACTTATGAGGATCCTCATGCCGCTCTAGCTGCTGTAGAGTGGTTTAACAACAAGGATTTTCATGGTAATATTATTGGAGTATTTATAGCACAATCTAAG AGCAAAGATGACACTGTTTGTAACTCTGTGGATGATCCCAATGATTTTGGCGGGTTTGAGGAAAATGCTAAGGATTTGAATGAGGGTGGGGGGAGAGGTA GAGGACAGGACGATGCTTCAGGGAAAGCCTGGCAACAGGATGGAGACTGGTTGTGTCCGAATACAAGTTGTTCCAATGTAAATTTTGCATTTCGTGGCGT GTGCAACCGTTGTGCAAGTGCCCGGCCTTCTGGTCCATCTGGCGGTGGTGCTGGAGCTGGAGGTCATGGGAGGGGACGCGGTGCCAATGACATTGGTGTC CCTGGCCGGTCAGTTGGTGCTCCTACCGGACTTTTTGGTCCAAATGACTGGACCTGTCCAATGTGTGGCAATATCAACTGGGCAAAGCGCTCAAAGTGCA ATGTTTGCAACACAAATAAACCTGGTCACAACGAGGGTGGTGTGAGAGGAGGACGAGGTGGTGGTTACAAAGAACTTGATGAAGAAGAATTAGAGGAAAC CAAGAGACGAAGAAAAGAAGCTGAAGATGATGGAGAGCTATATGACGAGTTTGGCAATCTGAAGAAAAAATTTCGGGCCAAAACTCAACAAGCTGAAGCT GGAAAGGTGCTTCCAGGTGCTGGACGTGCAGGATGGGAGGTTGAGGAAATCGGTGTCGGTGATAAAGAGGGGAGAGAGAGAAGCAGAGAAAGAGGGAGGG ATCGGGATGACAGGGAAAGCAGCAAGGCCAGAGATCGTGATGGTAGGGACAGGCGCCGTAGTCGTAGTAGGGATCGGGATCGGGATCGAGATTATGAGTA TGGTCGAAATAGAGAATATGGACGGGACAGGGACCGTGATCGGTACCGATACTGA
AA sequence Show only first row Show all	>Potri.008G085400.1 pacid=42807218 polypeptide=Potri.008G085400.1.p locus=Potri.008G085400 ID=Potri.008G085400.1.v4.1 annot-version=v4.1 MASYAGKGDPSNGTIYISNLPEGTDDIMLAGYFGTIGLLKKDKRTGRPKIWLYRDKMTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGNIIGVFIAQSK SKDDTVCNSVDDPNDFGGFEENAKDLNEGGGRGRGQDDASGKAWQQDGDWLCPNTSCSNVNFAFRGVCNRCASARPSGPSGGGAGAGGHGRGRGANDIGV PGRSVGAPTGLFGPNDWTCPMCGNINWAKRSKCNVCNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRKEAEDDGELYDEFGNLKKKFRAKTQQAEA GKVLPGAGRAGWEVEEIGVGDKEGRERSRERGRDRDDRESSKARDRDGRDRRRSRSRDRDRDRDYEYGRNREYGRDRDRDRYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.008G085400 [exp]	0	1
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.013G032500 [exp]	11.83	0.6413
AT1G09730			Cysteine proteinases superfami...		Potri.005G155600 [exp]	12.12	0.7020
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.003G110300 [exp]	13.41	0.7135
AT5G15270			RNA-binding KH domain-containi...		Potri.014G045000 [exp]	13.63	0.6602
AT1G77310			unknown protein		Potri.002G078800 [exp]	16.00	0.7041
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.005G124300 [exp]	21.16	0.6740
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	26.83	0.6678
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	30.74	0.6586
AT5G20260			Exostosin family protein (.1)		Potri.006G064900 [exp]	36.66	0.6558
AT3G22550			Protein of unknown function (D...		Potri.008G154600 [exp]	40.36	0.6548

Compare expression of checked genes

Potri.008G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.