Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19895 707 / 0 RING/U-box superfamily protein (.1) AT3G12940 155 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05230 141 / 5e-37 RING/U-box superfamily protein (.1) AT2G40640 142 / 6e-37 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171100 [exp] 946 / 0 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1) Potri.019G058300 [exp] 167 / 9e-46 AT5G05230 285 / 1e-92 RING/U-box superfamily protein (.1) Potri.011G143000 [exp] 162 / 1e-43 AT3G12940 779 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034201 [exp] 736 / 0 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 375 / 2e-127 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1) Lus10029068 [exp] 188 / 4e-56 AT3G19895 164 / 7e-48 RING/U-box superfamily protein (.1) Lus10002543 [exp] 149 / 9e-39 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034237 [exp] 145 / 5e-38 AT5G05230 229 / 2e-71 RING/U-box superfamily protein (.1) Lus10029029 [exp] 144 / 2e-37 AT5G05230 197 / 2e-59 RING/U-box superfamily protein (.1) Lus10027382 [exp] 99 / 1e-21 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G085700.1 pacid=42806324 polypeptide=Potri.008G085700.1.p locus=Potri.008G085700 ID=Potri.008G085700.1.v4.1 annot-version=v4.1 ATGGTTTTGATGATGATCCAACATCATCACCACCGCCACCACCAACACCAACATCAGCAAACCTCCACTGCACTACCACCACACCCTGTCCCTCTCTCCA CTTCCGCCCATAGATCCCCAGCCACTCCCTCCCACACTCAATCCCAACCCCCTCTTCCTCTGGCCCCTCTCTCCTCCTCCTCTCACCGTCTCCCACCACC AGCCCTCGATCATGTAATTTCCCCTGTCTCATCCGCAGCTCACCACTCCGCTGACCCGGCTCCCACACTGGCTAGGGTCCGGCTCTCTGATATCTCTCCC TACGATGGGGCTCCTGGTGGGCCCTACGTGCGGGCGGTGGATGCCCTTTCGGGGTCTTTAATGAGGCACAACGCTGCTGTTATTGAATTGGGGAGTGAAG AAGCCTCGCTTATGCGGTGTGGCCTCGAGGCCGCAAGGCTGTATTTTAGGAGTCGGTCTCAAAACGGTGTCGTTAAAGGTTGTAGCGGCCGCGGGGTTTA TATGTACAGAGCTGGAAGGCCAGTGGAAGATTGGGACTCGTCTCCGCCATGTATGGCTGAAATATTTAGGTGTATGGGAAAGGCAGCGCGCTCTGCTTTA TGTGCAATAGCAAGACATCTTCGTTTAAGAAGCGATGTTTTCAACCAATTGCTTGATGATACCCCATTGCCAGCTGGCGAGGTGTCTTCTTCGGTGCTTG TTGCCACCTATTCTCATACTTCTTTGCAAAATGGAAAAGGGGCTATTGGGGCAGGGAAGCCAGCGGCTAATGGTGAAGTTGAGAAGGGATTGTTGACTTT GATTTCCTCAGACAGTCCTGGTCTGCAGGTTTGTGACCCAAATGGTCGCTGGTACTTAGCTGATTGTGGCTCAGCTCCAGTGGATCTTTTACTCATTACT GGCAAGACACTTAGCCACACGACTGCTGGACTTCGTCCTGCTGCCTCATATAGAGCTGCTCCTGATTTCTCATCGGGTACTAACAGTGGTGGGAGGACTT CACTGGTATTCAGGCTCATGCCACAGGGAAATGCTATTTTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCCCAGAGCTATGTACCAATATC AGTGAGTCAGTTTATGGATGACCTTTCTGCTGAGGAGGATGTTGTGTGCAATCAACCTAATAATACTTATGTTGCTCGAAATGATATGAACAAGGAACCA TCACTAAGAAGTGTCCTCTCAGATCCCTTGTCAGGTGCATTCCTTGAAGATGCCATGTTTGTTTCCTGTGGACATTCGTTTGGTGGTCTCATGCTGAGAA GAGTCATTGATATGTCGAGATGTACACTTTGCAATGCTGAAATTGAGGCTGGGTCTTTGGTTCCTAATTATGCTCTTAGAGCTGCAGCATCAGCTGTAAA GAATGAAGATGATCGAAGGCTATTCCATAATGCAACTCTGCGAAAGCGTCGCAAAGAAATGGGTGACCACACAGATTCCATGAAGAAGAGACCACACGGA GAGAATGGAGATATTGCTGCTGACGATGGTTTGCATAGAGGAGTGCAGTATCCTTTTGCTGTAAATGAGAAAGTAGTGATTAAGGGAAATAGGAGGACAC CAGAAAAATTTGTTGGGAAGGAAGCAATCATCACTTCACAATGTCTCAATGGCTGGTACTTGCTTAAGATTATTGGTAGTGGTGAGAATGTTCGTCTACA ATATCGCTCTCTTAGAAAAATTTTGAACTCTGAAGCCATTGAAGACAGATGTGCTTCACAGCCAATTCAAAACAGCAGCTAA
AA sequence Show only first row Show all	>Potri.008G085700.1 pacid=42806324 polypeptide=Potri.008G085700.1.p locus=Potri.008G085700 ID=Potri.008G085700.1.v4.1 annot-version=v4.1 MVLMMIQHHHHRHHQHQHQQTSTALPPHPVPLSTSAHRSPATPSHTQSQPPLPLAPLSSSSHRLPPPALDHVISPVSSAAHHSADPAPTLARVRLSDISP YDGAPGGPYVRAVDALSGSLMRHNAAVIELGSEEASLMRCGLEAARLYFRSRSQNGVVKGCSGRGVYMYRAGRPVEDWDSSPPCMAEIFRCMGKAARSAL CAIARHLRLRSDVFNQLLDDTPLPAGEVSSSVLVATYSHTSLQNGKGAIGAGKPAANGEVEKGLLTLISSDSPGLQVCDPNGRWYLADCGSAPVDLLLIT GKTLSHTTAGLRPAASYRAAPDFSSGTNSGGRTSLVFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDVVCNQPNNTYVARNDMNKEP SLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVIDMSRCTLCNAEIEAGSLVPNYALRAAASAVKNEDDRRLFHNATLRKRRKEMGDHTDSMKKRPHG ENGDIAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKIIGSGENVRLQYRSLRKILNSEAIEDRCASQPIQNSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	1.00	0.9211
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	2.82	0.8889
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	3.87	0.8803
AT4G24900			unknown protein		Potri.012G098000 [exp]	4.00	0.8622
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	5.09	0.8685
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	6.24	0.8819
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	6.92	0.8801
					Potri.009G040500 [exp]	7.21	0.8813
AT1G15780			unknown protein		Potri.003G028245 [exp]	10.63	0.8043
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.008G009400 [exp]	11.53	0.7966

Compare expression of checked genes

Potri.008G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.