Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27640 1606 / 0 ARM repeat superfamily protein (.1) AT5G19820 278 / 7e-78 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT2G16950 74 / 3e-13 ATTRN1 transportin 1 (.1.2) AT2G16960 57 / 5e-08 ARM repeat superfamily protein (.1.2) AT1G26170 49 / 2e-05 ARM repeat superfamily protein (.1) AT2G31660 49 / 2e-05 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT1G64790 48 / 5e-05 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169800 [exp] 1852 / 0 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.003G220100 [exp] 278 / 6e-78 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 276 / 3e-77 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.013G056600 [exp] 255 / 3e-70 AT5G19820 1644 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 100 / 2e-21 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 84 / 3e-16 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.009G138200 [exp] 56 / 2e-07 AT2G16950 1316 / 0.0 transportin 1 (.1.2) Potri.008G109300 [exp] 49 / 3e-05 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 49 / 3e-05 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029067 [exp] 1691 / 0 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1) Lus10034202 [exp] 1688 / 0 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10013763 [exp] 159 / 1e-39 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 158 / 3e-39 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10025083 [exp] 59 / 1e-08 AT2G16950 1392 / 0.0 transportin 1 (.1.2) Lus10023999 [exp] 58 / 5e-08 AT2G16950 1380 / 0.0 transportin 1 (.1.2) Lus10025509 [exp] 51 / 5e-06 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10004767 [exp] 45 / 0.0006 AT1G64790 3557 / 0.0 ILITYHIA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G085800.4 pacid=42805756 polypeptide=Potri.008G085800.4.p locus=Potri.008G085800 ID=Potri.008G085800.4.v4.1 annot-version=v4.1 ATGGCACAGTCACTTGAACTGCTGCTGATTCAATTCTTGATGCCAGACAACGATGCCAGAAGGCAAGCAGAGGAGCAAATTAAGAGGCTAGCCAAAGATC CTCAAGTGGTCCCCGCCCTCGCTCAACATCTTCGCACCGCTAAAACTCCCAATGTTCGCCAACTCGCCGCCGTCCTCCTCCGCAAGAAGATCACTGGCCA CTGGGCTAAACTCTCTCCTCAACTCAAACTCCTTGTCAAGCAATCTCTCATTGAAAGCATCACCATGGAACACAGTTCTCCAGTAAGGAGAGCTAGTGCG AATGTGGTGAGTATAATTGCCAAATACGCAGTTCCGGCTGGAGAGTGGCCTGATTTGTTGCCCTTTTTGTTCCAATGTAGCCAAAGTGCACAGGAAGATC ATAGAGAAGTGGCACTGATCCTTTTCAGCTCTTTAACTGAAACTATCGGGAATGCATTTCAACCTCATTTCGCAGATTTGCAAGCTCTTTTGCTCAAGTG TCTGCAGGATGATACTAGCAACCGTGTTAGAATTGCTGCACTCAAGGCAGTGGGATCTTTTCTCGAGTTTACAAATGACGGGGATGAAGTGGTCAAATTT CGCCAGTTCATTCCAAGCATTTTAAACGTGGCTAGACAATGCCTTTCATCTGGTGATGAGGATGTTGCAATAATTGCTTTTGAAATCTTTGATGAGCTGA TTGAATCTCCTGCACCTCTTCTTGGAGATTCTGTTAAATCCATTGTGCAGTTCTCTCTTGAAGTTTGCTCTAGTCAAAATTTGGAATCCAACACACGTCA TCAGGCTATTCAGATAATTTCATGGCTGGCAAAGTACAAATACAGTTCCCTGAAAAAGTATAAGCTGGTCATCCCCATTCTGCAAGTGATGTGCCCCTTG CTTGCAGAATCAACTGATTCTGTTGAAGATGATGATCTTGCTCCTGATCGAGCTGCTGCAGAAGTTATTGACACTATGTCTTTGAACCTCTCAAAGCAAG TCTTTCCTCCTGTCTTTGAGTTTGCTTCTCTAAGTAGTCAGAGTGCGAACCCAAAGTTCCGGGAAGCTTCTGTTACAGCTTTAGGTGTTGTTTCAGAGGG TTGTCTGGAGTTGATGAAAGATAAATTGGAACCCATTCTTCATATTGTCTTGGGGGCTTTGAGGGATCCAGAACAAATGGTTAGAGGGGCTGCATCATTT GCATTGGGTCAATTTGCAGAGCATTTACAGCCTGAAATCTTGTCCCACTATGAAAGTGTTCTTCCCTGCATTTTAAATGCTATTGAGGATGCATCTGATG AAGTAAAGGAAAAGTCATACTACGCTTTAGCAGCATTTTGTGAGGACATGGGTGAAGAAATTCTTCCTTTCCTTGATCCTTTGATGCAGAAGCTTCTTGC AGCCCTCCAAAATAGCCCTCGTAATTTGCAGGAGACATGCATGTCTGCAATCGGTTCAGTTGCATCTGCTGCTGAGCAAGCTTTCATTCCTTATTCTGAA AGGGTTCTTGAGTTAATGAAATCGTTCATGGTGCTTACCAACGATGAAGATCTCCGATCACGAGCAAGGGCTACTGAGCTTGTAGGAATAGTGGCCATGT CTGCTGGGAGAGTGAGGATGGAACCAATTCTACCCCCTTTCATGGAAGCTGCAATTTCTGGTTTTGGATTGGAGTTCAGTGAGCTTCGGGAGTATACTCA TGGATTCTTTAGCAATGTAGCAGAAATTATGGATGATAGCTTTGCACAGTATCTTCCTCATGTCGTACCCCTGGCATTTGCTTCCTGCAATCTTGATGAT GGTTCTGCAGTGGACATCATTGAATCTGATGATGAAAATATCAATGGATTTGGTGGAGTCTCATCTGATGATGAAGCTCATGATGAGCCAAGAGTTCGGA ATATCAGTGTAAGAACAGGAGTGCTGGATGAAAAGGCAGCTGCAACTCAAGCACTTGGCTTATATGCACTTCACACAAAGAGTTCTTATTCTCCCTATTT GGAGGAGACATTAAGGATTCTGGTGAGACATTCAGGGTATTTCCATGAAGATGTTCGGCTTCAGGCTATCATTGCTTTGAAGTCTATTTTGACTGCAGCG CATGCAATCTTCCAGAGTCAAAATGATGGACCGGCAAAAGCAAGAGAAATGCTTGATACTGTGATGGATATTTACATCAAAACTATGACCGGAGATGATG ACAAGGAAGTAGTTGCTCAAGCTTGTACGAGTGTGGCAGAGATCATCAAGGATTATGGTTATGCAGCTATTGAACCATATATGTCTCGGCTTGTTGATGC GACTTTGGTATTGCTAAAAGAGGAGTCAGCCTGTCAGCAGTTGGAAGACGATAGTGATATGGAAGATGATGACACAGAACATGATGAAGTGCTTATGGAT GCTGTTTCTGACATTCTTCCTGCTTTCGCAGAGTCCATGGGTTCTCATTTTGCACCCATCTTTGCAAACCTATTTGAACCTTTGATGAAATTTGCGAAAG CTTCACGTCCTCTGCAAGATCGAACTATGGTGGTTGCTTGCCTTGCAGAAGTTGCTCAGGGCATGGGTGCTCCAATTGCGGATTATGTTGATAGAGTGAT GCCCTTAGCAATCAAAGAACTCGCATCATCTAATGCAACTAACAGGAGGAATGCTGCATTTTGTGTTGGAGAATTGTGCAAAAATGGTGGGGAGTCAACT TTGAAATATTATGGTGATACATTGCGCGGGCTCTTCCCATTATTTGGAGAGTCTGAGCCAGATGACGCTGTCAGGGATAATGCAGCTGGTGCTGTTGCAA GGATGATAATGGCGCATCCCCAGTCCGTTCCATTAAATCAGGTCCTTCCAGTTTTCCTGAAAGTTCTTCCATTAAAAGAAGATCGTGAAGAGTCCATGGC TGTCTACAGTTGTGTCTATACTCTTGTTTTGTCATCCAATCAACAGATCCTTGCACTTGTTCCAGAGTTGGTCAATCTTTTTGCTCAGGTTGTGGTTTCT CCAGTTGAAACACCTGAAGTCAAGGCTCAAGTAGGAAGAGCTTTCTCACACCTGATTTCACTCTATGGTCATCAAATGCAACCTCTATTAAGTAACCTCC CGCCTGCACATGCTAGTGCTCTAGCTGCATTTGCCCCCAAAAGCTGA
AA sequence Show only first row Show all	>Potri.008G085800.4 pacid=42805756 polypeptide=Potri.008G085800.4.p locus=Potri.008G085800 ID=Potri.008G085800.4.v4.1 annot-version=v4.1 MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVVPALAQHLRTAKTPNVRQLAAVLLRKKITGHWAKLSPQLKLLVKQSLIESITMEHSSPVRRASA NVVSIIAKYAVPAGEWPDLLPFLFQCSQSAQEDHREVALILFSSLTETIGNAFQPHFADLQALLLKCLQDDTSNRVRIAALKAVGSFLEFTNDGDEVVKF RQFIPSILNVARQCLSSGDEDVAIIAFEIFDELIESPAPLLGDSVKSIVQFSLEVCSSQNLESNTRHQAIQIISWLAKYKYSSLKKYKLVIPILQVMCPL LAESTDSVEDDDLAPDRAAAEVIDTMSLNLSKQVFPPVFEFASLSSQSANPKFREASVTALGVVSEGCLELMKDKLEPILHIVLGALRDPEQMVRGAASF ALGQFAEHLQPEILSHYESVLPCILNAIEDASDEVKEKSYYALAAFCEDMGEEILPFLDPLMQKLLAALQNSPRNLQETCMSAIGSVASAAEQAFIPYSE RVLELMKSFMVLTNDEDLRSRARATELVGIVAMSAGRVRMEPILPPFMEAAISGFGLEFSELREYTHGFFSNVAEIMDDSFAQYLPHVVPLAFASCNLDD GSAVDIIESDDENINGFGGVSSDDEAHDEPRVRNISVRTGVLDEKAAATQALGLYALHTKSSYSPYLEETLRILVRHSGYFHEDVRLQAIIALKSILTAA HAIFQSQNDGPAKAREMLDTVMDIYIKTMTGDDDKEVVAQACTSVAEIIKDYGYAAIEPYMSRLVDATLVLLKEESACQQLEDDSDMEDDDTEHDEVLMD AVSDILPAFAESMGSHFAPIFANLFEPLMKFAKASRPLQDRTMVVACLAEVAQGMGAPIADYVDRVMPLAIKELASSNATNRRNAAFCVGELCKNGGEST LKYYGDTLRGLFPLFGESEPDDAVRDNAAGAVARMIMAHPQSVPLNQVLPVFLKVLPLKEDREESMAVYSCVYTLVLSSNQQILALVPELVNLFAQVVVS PVETPEVKAQVGRAFSHLISLYGHQMQPLLSNLPPAHASALAAFAPKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	0	1
AT1G67690			Zincin-like metalloproteases f...		Potri.010G054466 [exp]	2.00	0.8311
AT4G24610			unknown protein		Potri.002G104100 [exp]	2.44	0.8283
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.011G098300 [exp]	5.47	0.8148	Pt-PHB.1
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.013G070001 [exp]	6.16	0.7687
AT2G14120		DRP3B	dynamin related protein (.1.2....		Potri.012G125300 [exp]	9.00	0.7596
AT4G20430			Subtilase family protein (.1.2...		Potri.011G155400 [exp]	9.16	0.8231
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	14.73	0.7534
AT5G16850		ATTERT	telomerase reverse transcripta...		Potri.003G022600 [exp]	17.94	0.7719
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	22.09	0.7909
AT1G10580			Transducin/WD40 repeat-like su...		Potri.010G064600 [exp]	22.75	0.7509

Compare expression of checked genes

Potri.008G085800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.