Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 251 / 2e-83 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 243 / 5e-80 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 227 / 2e-73 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 221 / 2e-71 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 144 / 7e-42 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 129 / 9e-36 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 92 / 3e-22 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 87 / 3e-20 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 58 / 2e-09 RING/U-box superfamily protein (.1.2) AT4G32670 56 / 1e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 411 / 2e-146 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.019G111700 [exp] 161 / 2e-48 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G115600 [exp] 159 / 2e-47 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 157 / 1e-46 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.013G126600 [exp] 155 / 4e-46 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 143 / 3e-41 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 134 / 4e-38 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 95 / 3e-23 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 87 / 1e-20 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036754 [exp] 332 / 3e-115 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 322 / 5e-111 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 315 / 2e-108 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10034454 [exp] 276 / 7e-93 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 271 / 1e-90 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 264 / 1e-87 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 260 / 2e-86 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10030472 [exp] 243 / 1e-79 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 149 / 9e-44 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034640 [exp] 142 / 2e-40 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.008G086300.2 pacid=42806296 polypeptide=Potri.008G086300.2.p locus=Potri.008G086300 ID=Potri.008G086300.2.v4.1 annot-version=v4.1 ATGAGTGATCACGTGGTGTTGGATGTTGACCGACTCATAAAGCCGCCGGTGACTGAGGAGTCTGTTCAGGCGATCGTTAAGGAAGCCGACGCCGGGCCCT CGTGCTCGAGGGCAAGTGAAGGAACCGATGGTCGTGTTTCAGGGGAGGAAGGGGAGGAGGAGCCGTTGATTCAGGGGGGCGAGTGTCGCATTTGCCAGGA GGAGGATTCCATCAGCAATTTGGAGACTCCTTGTGCTTGCAGCGGCAGCCTCAAGTATGCCCATAGGAAGTGCGTCCAGCACTGGTGCAATGAGAAGGGT GATATCACTTGTGAGATATGCCATCAGCCTTACCAACCTGATTACACCGCTCCACCTCATCCACCACACTCTGAAGATACTGCTATTGATATTGGTGGAG GCTGGACAATCTCTGGCACTCAACTAGATTTGCGTGATCCTCGCTTATTGGCAATCGCAGAGGCTGAGCGCCATTTTCTAGAAGCAGAGTATGATGACTA TGCTACTTCAAATGCTAGTGGAGCTGCATTTTGCCGTTCAGTTGCTCTTATCTTGATGGCCCTCCTGCTCTTGCGGCATGCATTGACTCTCACAGATTCT GATGCAGACGATGACGTATCTACATTTTTTTCTCTTTTCCTGCTTCGGGCAGCTGGTTTTCTTCTGCCCTGTTACATCATGGCCTGGGCCATCAGCATCT TGCAGCGTCGGAGGCAAAGACAGGAGGCAGCAGCATTGGCAGCGACACAGGTTGCTTTTGTGCTCCAATCAGGGCAACAGAGGGGTCTGCAGTTTACCAT TGCACCAGGACCTACTGTAACTCCTCACCAGGAACCTGTTTAA
AA sequence Show only first row Show all	>Potri.008G086300.2 pacid=42806296 polypeptide=Potri.008G086300.2.p locus=Potri.008G086300 ID=Potri.008G086300.2.v4.1 annot-version=v4.1 MSDHVVLDVDRLIKPPVTEESVQAIVKEADAGPSCSRASEGTDGRVSGEEGEEEPLIQGGECRICQEEDSISNLETPCACSGSLKYAHRKCVQHWCNEKG DITCEICHQPYQPDYTAPPHPPHSEDTAIDIGGGWTISGTQLDLRDPRLLAIAEAERHFLEAEYDDYATSNASGAAFCRSVALILMALLLLRHALTLTDS DADDDVSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQQRGLQFTIAPGPTVTPHQEPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02960			RING/FYVE/PHD zinc finger supe...		Potri.008G086300 [exp]	0	1
AT2G24300			Calmodulin-binding protein (.1...		Potri.018G111200 [exp]	8.42	0.7722	Pt-CBP60.8
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	10.19	0.6172	Pt-MMT.1,MMT
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.016G105700 [exp]	12.32	0.7356
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Potri.016G062100 [exp]	26.92	0.6386
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	40.47	0.6498
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.017G142400 [exp]	44.04	0.6580
AT3G14430			unknown protein		Potri.014G105250 [exp]	51.22	0.6106
AT2G43230			Protein kinase superfamily pro...		Potri.007G124000 [exp]	52.30	0.6201
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Potri.002G030500 [exp]	53.49	0.6453	Pt-CKX6.3
AT2G06530		VPS2.1	SNF7 family protein (.1)		Potri.018G065100 [exp]	63.16	0.6216

Compare expression of checked genes

Potri.008G086300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.