Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26800 194 / 1e-62 RING/U-box superfamily protein (.1) AT1G14200 135 / 7e-40 RING/U-box superfamily protein (.1) AT5G56340 100 / 2e-24 ATCRT1 RING/U-box superfamily protein (.1) AT3G19950 98 / 3e-24 RING/U-box superfamily protein (.1) AT3G13430 96 / 2e-23 RING/U-box superfamily protein (.1.2.3) AT3G46620 91 / 4e-21 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G55530 89 / 8e-21 RING/U-box superfamily protein (.1) AT4G26400 87 / 4e-20 RING/U-box superfamily protein (.1.2) AT5G59550 86 / 2e-19 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G03000 86 / 3e-19 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168300 [exp] 335 / 5e-118 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 102 / 2e-25 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 93 / 5e-24 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 96 / 2e-23 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 97 / 3e-23 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 96 / 4e-23 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 93 / 2e-22 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 89 / 1e-20 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 89 / 2e-20 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012819 [exp] 195 / 1e-62 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 182 / 2e-57 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10037170 [exp] 152 / 3e-46 AT1G26800 128 / 5e-37 RING/U-box superfamily protein (.1) Lus10036757 [exp] 152 / 3e-46 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10002637 [exp] 105 / 3e-26 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 104 / 2e-25 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10010179 [exp] 93 / 1e-22 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10013397 [exp] 94 / 4e-22 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10022967 [exp] 84 / 3e-19 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10031422 [exp] 82 / 3e-18 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.008G087200.1 pacid=42808277 polypeptide=Potri.008G087200.1.p locus=Potri.008G087200 ID=Potri.008G087200.1.v4.1 annot-version=v4.1 ATGGCCTCTGAGACTGAATTACCTGCTGAATTATCTTCTATGTTTGAGAGGCTTTTAAGGCATAGAGACCTCTCTTTGTTTTTACCTTTTATTTTTGGGT TCACCTCCACTAACTCCACAGAGGAACGTGACCCAGATCAAGAACCACAAACAACAGACCCAAACGAAAGAATCATCCTTATAAACCCTCTCACTCAAGG CATGGTGGTGATTGAAGGAGCTGCAAGTCTTGAATCTTTACTTAGAGACATAGGTAACAAGAATGGTCAACCACCAGCCTCAAAAGCATCCATAGAGGCC ATGCCAAGTGTGGAGATCGGGGAAGATAATAAAGATGGCGAGTGTGCTATCTGTTTAGAGGAGTGGGAGCCTGGTGCGGTAGTAAAGGAGATGCCTTGTA AGCATAGGTTCCATGGTAATTGTGTAGAAAAGTGGTTAAAGATTCATGGGAATTGCCCTGTTTGCAGGTATAAGATGCCTGTCGATGAGGAGGAGTTGGG GAAGAAGAGAGATGGGGGAGATGGAGGGAGAGAATGGAGGAGAGCTGAAAGAGAGATTTGGGTTAGTTTTGCATTTAATGGTAATAGGAGAAATAGGGAT TCAAATGAAAATCCTTCAAGTGATTCTACTGATTTCTCTACTTCAAGTCCAAGTGCTGATCATGAAACGGAGAGTTAA
AA sequence Show only first row Show all	>Potri.008G087200.1 pacid=42808277 polypeptide=Potri.008G087200.1.p locus=Potri.008G087200 ID=Potri.008G087200.1.v4.1 annot-version=v4.1 MASETELPAELSSMFERLLRHRDLSLFLPFIFGFTSTNSTEERDPDQEPQTTDPNERIILINPLTQGMVVIEGAASLESLLRDIGNKNGQPPASKASIEA MPSVEIGEDNKDGECAICLEEWEPGAVVKEMPCKHRFHGNCVEKWLKIHGNCPVCRYKMPVDEEELGKKRDGGDGGREWRRAEREIWVSFAFNGNRRNRD SNENPSSDSTDFSTSSPSADHETES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26800			RING/U-box superfamily protein...		Potri.008G087200 [exp]	0	1
AT3G03750		SUVR3, SDG20	SET domain protein 20 (.1.2)		Potri.013G064600 [exp]	4.79	0.7820	SDG935
AT5G52880			F-box family protein (.1)		Potri.012G035500 [exp]	13.41	0.7156
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.010G237100 [exp]	15.74	0.7513
AT5G18200			UTP:galactose-1-phosphate urid...		Potri.006G233200 [exp]	16.09	0.7300
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	20.83	0.7048
AT3G48070			RING/U-box superfamily protein...		Potri.012G074500 [exp]	25.49	0.7470
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	26.22	0.6486	Pt-DREB1.3,DREB35
AT4G01000			Ubiquitin-like superfamily pro...		Potri.014G098100 [exp]	31.28	0.7116
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	32.49	0.6789
AT1G02020			nitroreductase family protein ...		Potri.002G146100 [exp]	35.66	0.7252

Compare expression of checked genes

Potri.008G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.