Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69580 275 / 3e-91 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 218 / 3e-68 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 216 / 3e-67 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 190 / 2e-58 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 186 / 6e-57 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 178 / 3e-53 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G45580 154 / 6e-45 GARP Homeodomain-like superfamily protein (.1) AT2G01060 148 / 2e-42 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G12730 145 / 6e-42 GARP Homeodomain-like superfamily protein (.1) AT5G29000 138 / 6e-38 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167901 [exp] 534 / 0 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 226 / 9e-71 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 219 / 2e-68 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 199 / 4e-62 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 196 / 8e-61 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 175 / 4e-52 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 169 / 8e-50 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 157 / 3e-46 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 156 / 2e-45 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037169 [exp] 308 / 9e-105 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 303 / 1e-102 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 223 / 5e-70 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 223 / 8e-70 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10016676 [exp] 192 / 4e-59 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 191 / 1e-58 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 174 / 1e-50 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 171 / 1e-49 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 152 / 5e-44 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 148 / 2e-42 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.008G087600.2 pacid=42807549 polypeptide=Potri.008G087600.2.p locus=Potri.008G087600 ID=Potri.008G087600.2.v4.1 annot-version=v4.1 ATGGGTCTGCAACATCAAAGTATGAACTTGGTTTTGTCTACTGATGCCAAGCCTAGGCTAAAATGGACTCAAGAACTTCATCAAAGGTTTGTTGAAGCAG TCAATCAACTTGGAGGTGCAGATAAGGCAACACCAAAGAGTCTGATGAGGGTGATGGGGATTCCTGGACTTACTTTATACCACTTGAAGAGCCATTTACA GAAATACAGGCTAGGGAAGAGTCAGCAGTCCCTGTTCAGCATTGAAAGCGAGCAAGAAGATGACAAAGAGATTCAAAGTAGTGATGATCATTTCAAAGAG TCTGCAGTGACTCGAAGTAGTAGGGGGATCTGCAGTGATGGAAACCACCATCCAATTAACGAAAGCTTTCAGATTGCACAGGCTCTCCAAATGCAAATGG AAGTGCAGAGGAAACTTCATGAACAGATTGAGGTACAGAGACATTTGCAGCTGAGAATTGAAGCTCAAGGGAAATACTTACAGACAGTATTGAAGAAAGC ACAGGAAACTCTGGCTGGATATAATTCTTCTTCAATGGGTATAGAACTTGCAAAAGCCGAGCTCTGTAGATTAGTCTCAATGGTTAATAGTGGATGTCCA AGTTCTTCAATATCAGAACTGACAGAAACAGGAGGTTCAATTTTAAAAGACATAGAAAGGACACAAATGAGGAATACAGTATGTTCAATGGAAAGCTCCT TGACATCATCTGAGAGTTCTGGAAGAAAGGAAGACATGCAAAAAGAGAATGAGATTCATGACACCAACAAGTCCAATACAGCCTTTGTTGAGCTTCCTTT AATGGATATTCACCCCCAAGAAAACCTATTGGATAATGATTCAAGTAATCAAGGGAAGAAGAGGAGTGGTAGTATCATATCTGATGGTGTTTCTGTAGAG CAGCCCCTGGCTAGAAGATTGAAAAATGGTGATCAGTTGAGGTTGGGGACGTTTGATTTGAATAGTTAA
AA sequence Show only first row Show all	>Potri.008G087600.2 pacid=42807549 polypeptide=Potri.008G087600.2.p locus=Potri.008G087600 ID=Potri.008G087600.2.v4.1 annot-version=v4.1 MGLQHQSMNLVLSTDAKPRLKWTQELHQRFVEAVNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQSLFSIESEQEDDKEIQSSDDHFKE SAVTRSSRGICSDGNHHPINESFQIAQALQMQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQTVLKKAQETLAGYNSSSMGIELAKAELCRLVSMVNSGCP SSSISELTETGGSILKDIERTQMRNTVCSMESSLTSSESSGRKEDMQKENEIHDTNKSNTAFVELPLMDIHPQENLLDNDSSNQGKKRSGSIISDGVSVE QPLARRLKNGDQLRLGTFDLNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	0	1
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.004G019800 [exp]	3.74	0.8352
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	4.58	0.8364
AT5G66815			unknown protein		Potri.014G034500 [exp]	7.34	0.8171
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.012G132400 [exp]	10.58	0.7908	Pt-GA20.1,GA20ox6
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019366 [exp]	10.67	0.7856
					Potri.019G005913 [exp]	11.40	0.7879
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.001G105800 [exp]	11.66	0.7567
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.018G054800 [exp]	16.97	0.7221
AT5G41460			Protein of unknown function (D...		Potri.015G106101 [exp]	17.88	0.7405
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G023600 [exp]	19.28	0.7330

Compare expression of checked genes

Potri.008G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.