Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29000 63 / 2e-12 Calcium-binding EF-hand family protein (.1) AT5G39670 55 / 1e-09 Calcium-binding EF-hand family protein (.1) AT3G59440 48 / 5e-07 Calcium-binding EF-hand family protein (.1) AT3G07490 47 / 5e-07 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G20780 47 / 6e-07 CML42 calmodulin like 42 (.1) AT3G47480 47 / 1e-06 Calcium-binding EF-hand family protein (.1) AT4G03290 44 / 5e-06 EF hand calcium-binding protein family (.1) AT2G43290 45 / 8e-06 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT1G05990 44 / 9e-06 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT5G44460 44 / 1e-05 CML43 calmodulin like 43 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G084800 [exp] 67 / 4e-14 AT5G39670 142 / 1e-42 Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 51 / 3e-08 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 49 / 2e-07 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 47 / 1e-06 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 46 / 1e-06 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 45 / 5e-06 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.004G122900 [exp] 40 / 0.0002 AT5G39670 141 / 3e-42 Calcium-binding EF-hand family protein (.1) Potri.014G070700 [exp] 40 / 0.0003 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.006G112500 [exp] 40 / 0.0004 AT4G20780 238 / 2e-80 calmodulin like 42 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042369 [exp] 70 / 3e-15 AT5G39670 133 / 2e-39 Calcium-binding EF-hand family protein (.1) Lus10026301 [exp] 69 / 1e-14 AT5G39670 135 / 5e-40 Calcium-binding EF-hand family protein (.1) Lus10007536 [exp] 57 / 5e-10 AT5G39670 131 / 2e-38 Calcium-binding EF-hand family protein (.1) Lus10012199 [exp] 53 / 7e-09 AT5G39670 131 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10020389 [exp] 46 / 5e-07 AT3G07490 130 / 1e-40 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10034463 [exp] 48 / 7e-07 AT3G29000 103 / 2e-27 Calcium-binding EF-hand family protein (.1) Lus10019090 [exp] 47 / 1e-06 AT3G29000 103 / 1e-27 Calcium-binding EF-hand family protein (.1) Lus10009564 [exp] 46 / 2e-06 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10017174 [exp] 46 / 2e-06 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10021134 [exp] 45 / 6e-06 AT4G20780 236 / 8e-80 calmodulin like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13499 [poplar] [flax] EF-hand_7 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.008G087900.1 pacid=42808472 polypeptide=Potri.008G087900.1.p locus=Potri.008G087900 ID=Potri.008G087900.1.v4.1 annot-version=v4.1 ATGTTAGCAAGGATGTCTGGCCGTATACTCTTAAATATCCTGTTTTACCTTCAAACTCTACTAAATCTTTTCTTCGCAAGTGTCAAAACAAGCTTGAGTC CTGAAAAGTTGAAAAAACAACAGGGTTGTGTTCAATATCATGACAGGGAACATCATGAAAAACTAAACCAGGCAGATATAAAAAAGGTCATGAACAGGTT AGGATTGGTGCTTCATGAAGACGGCTTGGGTGGTGACGAGGGGTTCGGTGCAGATGAGCTATTAAGTTTATTCGAGGAAGAGGAGCCCTGCAGCTTGGAG GAGGTGAAGGAAGTTTTTGACGTGTTTGATGAGAACAAAGATGGGTTTATAGATGCAAGAGAGTTAAACAGAGTGATGTGTCGTTTGGGTTTGAAGGAAG GGATGGAAGTAGAGGAGTGTTCAAGAATGATCCAAGCCGTTGGAGAGGATAGGAAGGAAAAGATCGATTTCAACGACTTTTTCAGGTTTATGGAGAGGTG TTATTACTGA
AA sequence Show only first row Show all	>Potri.008G087900.1 pacid=42808472 polypeptide=Potri.008G087900.1.p locus=Potri.008G087900 ID=Potri.008G087900.1.v4.1 annot-version=v4.1 MLARMSGRILLNILFYLQTLLNLFFASVKTSLSPEKLKKQQGCVQYHDREHHEKLNQADIKKVMNRLGLVLHEDGLGGDEGFGADELLSLFEEEEPCSLE EVKEVFDVFDENKDGFIDARELNRVMCRLGLKEGMEVEECSRMIQAVGEDRKEKIDFNDFFRFMERCYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29000			Calcium-binding EF-hand family...		Potri.008G087900 [exp]	0	1
AT5G04010			F-box family protein (.1)		Potri.006G044801 [exp]	2.00	0.9782
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	3.87	0.9753
					Potri.010G078950 [exp]	5.91	0.9566
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	6.32	0.9638	WRKY40.2
AT5G41330			BTB/POZ domain with WD40/YVTN ...		Potri.001G102300 [exp]	7.74	0.9619
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	9.94	0.9432	ERF11,Pt-EREBP1.3
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088358 [exp]	10.95	0.9486
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	11.48	0.9396
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.002G191800 [exp]	13.41	0.9373
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	13.49	0.9351

Compare expression of checked genes

Potri.008G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.