Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03060 297 / 7e-98 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G69540 247 / 6e-79 MADS AGL94 AGAMOUS-like 94 (.1) AT1G18750 248 / 1e-78 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G77980 90 / 6e-20 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 86 / 2e-18 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 82 / 2e-17 MADS AGL67 AGAMOUS-like 67 (.1.2) AT2G26320 57 / 5e-10 MADS AGL33 AGAMOUS-like 33 (.1) AT5G13790 59 / 1e-09 MADS AGL15 AGAMOUS-like 15 (.1) AT3G57390 57 / 3e-09 MADS AGL18 AGAMOUS-like 18 (.1.2) AT4G24540 55 / 2e-08 MADS AGL24 AGAMOUS-like 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167300 [exp] 608 / 0 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.002G092300 [exp] 81 / 1e-16 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G087500 [exp] 76 / 4e-15 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.009G055700 [exp] 63 / 4e-11 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.015G098400 [exp] 60 / 3e-10 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.006G048700 [exp] 59 / 1e-09 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.005G118000 [exp] 58 / 2e-09 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.005G155300 [exp] 57 / 5e-09 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G105600 [exp] 56 / 5e-09 AT2G22540 288 / 3e-99 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026613 [exp] 473 / 1e-166 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 454 / 7e-160 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10036761 [exp] 440 / 5e-154 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10037166 [exp] 434 / 1e-151 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2) Lus10034464 [exp] 275 / 3e-86 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10019089 [exp] 267 / 5e-86 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10022506 [exp] 87 / 1e-18 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10024823 [exp] 85 / 2e-18 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10016810 [exp] 82 / 6e-17 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10017388 [exp] 61 / 2e-10 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.008G088200.2 pacid=42808331 polypeptide=Potri.008G088200.2.p locus=Potri.008G088200 ID=Potri.008G088200.2.v4.1 annot-version=v4.1 ATGCAATCCTATCATATATGCAACCCCTTCTCTCTCTTCTTCTTCTTCCCCTCTCTCTCTACTTTTTCCTGGTTCCCACATTTAAATATTCTTTTCTATC ATCCAAATTCCACTCGTCGTTTGATTTGCTCCTTAAGGATGGGTAGGGTGAAGCTAAAGATTAAGAAATTGGAGAATACAAATGGACGTCAAGCGACCTA TGCCAAGAGGAAACATGGTATCATGAAGAAGGCTAATGAGTTATCTATACTATGTGACATAGACATTATCCTTCTCATGTTTTCACCAACTGGCAAGCCT TCGTTGTGTAAAGGAGCAAGCAGTAGCATCGAAGAAGTAATTACAAAATTTGCTCAGTTAACACCACAAGAAAGGGCGAAGAGGAAGTTAGAAAGCCTTG AAGCACTGAAGAAAACTTTTAAGAAGCTGGACCATGATGTTAATATACCAGAATTTCTTGGTACAAGTTCTCAAACAATAGAGGACCTGACTAGCCAATC AAGGCTACTGCAGAATCAACTATCTGATGTGCACAAGAAGCTGAGCTACTGGACCAATCCAGATGAGATTAGCAGCTTAGAGCATCTAGGGCAATTGGAA AGTTCACTCAGGGAATCACTTAATCGGATTCGATCACATAAGGAACACCTGGGAAAACAGCATCTTATGTCTCTAGAATGCCATAGTCAGTTTCAGAATG CGATGCATGTACCTTTTAGAATGGGTGTGGAGCAGCAGCTCCCACCTATTTCATGGATTCCTAACACCGACAGTCAGCATATTATGTTACCAGAGGACCC AAATCTGCTTCCCCATAGGGATGCGGAGTGCTCTGCAACCACCTCTTTTGGGAGTTATTCTGGCTACTTTGGCGCGGGGAAAAATTCGGAGCTATCTAGT TCTGGTCAAGAAAGTGGTATGAATGGTATTCTTGATGAGTTTAATGGAACTGCATCACTGAGGCTGCAGATGGCTGGGCAGTACCCTTACCTGCCTGGGT CATACAATCTAAATTTGTTGAACGATTCAAAATTCCAACCTGCAGCAGAGATGAAAACACAAAAAAGCCCTGAGGATTTTCATGTTAATGGAAGTTTTGA AGCTCCTAAACCTGGGTATGACTCCACCCCTTGTGGTTGGGCTTCTACACCAGGATCGTGCGCTGTTACTATGTTTGATGACCATTTGTATTCTCAGCAA CCACACTGA
AA sequence Show only first row Show all	>Potri.008G088200.2 pacid=42808331 polypeptide=Potri.008G088200.2.p locus=Potri.008G088200 ID=Potri.008G088200.2.v4.1 annot-version=v4.1 MQSYHICNPFSLFFFFPSLSTFSWFPHLNILFYHPNSTRRLICSLRMGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKP SLCKGASSSIEEVITKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIPEFLGTSSQTIEDLTSQSRLLQNQLSDVHKKLSYWTNPDEISSLEHLGQLE SSLRESLNRIRSHKEHLGKQHLMSLECHSQFQNAMHVPFRMGVEQQLPPISWIPNTDSQHIMLPEDPNLLPHRDAECSATTSFGSYSGYFGAGKNSELSS SGQESGMNGILDEFNGTASLRLQMAGQYPYLPGSYNLNLLNDSKFQPAAEMKTQKSPEDFHVNGSFEAPKPGYDSTPCGWASTPGSCAVTMFDDHLYSQQ PH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Potri.008G088200 [exp]	0	1
					Potri.010G129867 [exp]	7.14	0.9262
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	23.23	0.9115
AT2G37460			nodulin MtN21 /EamA-like trans...		Potri.006G082700 [exp]	33.16	0.9102
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	34.81	0.8738
AT3G04900			Heavy metal transport/detoxifi...		Potri.004G144200 [exp]	56.67	0.8792
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281800 [exp]	64.40	0.8989
AT5G59990			CCT motif family protein (.1.2...		Potri.001G233600 [exp]	69.28	0.8943
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.018G051800 [exp]	73.89	0.8920
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G469000 [exp]	102.11	0.8867
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	104.43	0.8891

Compare expression of checked genes

Potri.008G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.