Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtEXPA4,EXPA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69530 335 / 3e-117 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 325 / 2e-113 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G26770 323 / 2e-112 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 303 / 2e-104 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G29030 285 / 2e-97 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G40610 280 / 2e-95 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G02260 279 / 7e-95 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G05290 275 / 2e-93 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT3G55500 275 / 3e-93 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 273 / 1e-92 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167200 [exp] 367 / 2e-129 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 328 / 1e-114 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.004G123200 [exp] 326 / 1e-113 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 317 / 3e-110 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.001G001100 [exp] 313 / 1e-108 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 308 / 2e-106 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.013G154700 [exp] 305 / 2e-105 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.016G135200 [exp] 290 / 3e-99 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 288 / 9e-99 AT2G40610 379 / 2e-134 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 346 / 3e-121 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 330 / 4e-115 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 327 / 4e-114 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 300 / 4e-103 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10008603 [exp] 299 / 9e-103 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10009917 [exp] 296 / 6e-102 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 295 / 2e-101 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10034227 [exp] 294 / 8e-101 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10029038 [exp] 276 / 9e-94 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 270 / 3e-91 AT2G39700 447 / 4e-161 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.008G088300.2 pacid=42808428 polypeptide=Potri.008G088300.2.p locus=Potri.008G088300 ID=Potri.008G088300.2.v4.1 annot-version=v4.1 ATGAAAATGGCTCTAGCTGGATTTATCTTGGTGGGTCTCCTTGCAATGGTTTCATCTGTTAATGGTTATGGTGGTGGAGGGTGGATTAATGCCCGTGCAA CCTTCTACGGAGGTGGTGATGCTTCCGGCACAATGGGTGGGGCTTGCGGTTACGGGAACTTGTACAGCCAGGGGTATGGTACAAATACTGCAGCTTTGAG CACAGCTCTGTTCAATAGCGGGTTAAGTTGTGGGTCTTGCTACGAGATTAGGTGCGTGAATGACCCCAAATGGTGCCTGCCTGGCTCCATTTTGGTCACA GCCACCAATTTCTGCCCTCCAAACAATGCCCTGCCTAACAATGCAGGGGGGTGGTGTAACCCTCCTCAACACCACTTTGATCTCTCTCAGCCTGTCTTCC AACACATTGCCCGATACAGTGCTGGTGTTGTACCTGTGTCCTACAGAAGGGTACCCTGCAGAAGGAGAGGAGGCATAAGATTCACAATCAATGGTCACTC CTACTTCAATCTAGTCCTGATAACCAACGTTGGTGGTGCTGGTGATGTGCATGCTGTGTCCGTCAAGGGGTCTAGGACTGGATGGCAACCAATGTCAAGG AACTGGGGGCAAAACTGGCAAAGCAACAATTATCTTAACGGACAAAGTCTTTCCTTCAAGGTCACCACCAGCGATGGCCGTACTGTGGTCTCCTACAATG CTGCTCCCTCTAGCTGGTCCTTTGGGCAGACCTTCTCTGGTGCCCAGTTCCGCTAG
AA sequence Show only first row Show all	>Potri.008G088300.2 pacid=42808428 polypeptide=Potri.008G088300.2.p locus=Potri.008G088300 ID=Potri.008G088300.2.v4.1 annot-version=v4.1 MKMALAGFILVGLLAMVSSVNGYGGGGWINARATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCVNDPKWCLPGSILVT ATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFQHIARYSAGVVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQPMSR NWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNAAPSSWSFGQTFSGAQFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	0	1	PtEXPA4,EXPA1.2
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	1.00	0.9056
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	2.44	0.8736
AT1G04030			unknown protein		Potri.013G047700 [exp]	6.70	0.8625
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.010G167200 [exp]	7.54	0.8026	EXPA1.1,PtEXPA3
AT5G08260		SCPL35	serine carboxypeptidase-like 3...		Potri.007G072300 [exp]	10.14	0.7397
AT2G07170			ARM repeat superfamily protein...		Potri.006G079500 [exp]	10.95	0.8205
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.010G047900 [exp]	12.96	0.8021
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	16.00	0.8529
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	16.27	0.8326	ALC.2
AT3G03620			MATE efflux family protein (.1...		Potri.015G139400 [exp]	19.44	0.8029

Compare expression of checked genes

Potri.008G088300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.