Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69523 315 / 4e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69526 283 / 2e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G69520 229 / 2e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 47 / 2e-05 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G73600 47 / 2e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 45 / 5e-05 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 44 / 8e-05 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT5G13710 41 / 0.0006 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167150 [exp] 101 / 2e-26 ND / Potri.016G056000 [exp] 48 / 4e-06 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.015G039000 [exp] 47 / 1e-05 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.013G101700 [exp] 46 / 2e-05 AT1G22800 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G263700 [exp] 45 / 3e-05 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 44 / 0.0001 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 44 / 0.0001 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.012G047400 [exp] 44 / 0.0002 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G058600 [exp] 42 / 0.0004 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037162 [exp] 344 / 4e-113 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036766 [exp] 310 / 6e-105 AT1G69523 246 / 2e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 49 / 5e-06 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10031348 [exp] 46 / 3e-05 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023995 [exp] 44 / 0.0001 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10042006 [exp] 43 / 0.0002 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018010 [exp] 42 / 0.0009 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G088500.1 pacid=42807922 polypeptide=Potri.008G088500.1.p locus=Potri.008G088500 ID=Potri.008G088500.1.v4.1 annot-version=v4.1 ATGTTTAAATTCATATATGACATTAATTTCCACCGCAGACTGAATATACCGGCCCCTCCTGTTAGGATGAGCCTTCAGTCCTCCCTCTTCACCTTCAGCT TCACCACTCCCTGCAGCAGCTCTTCTCATGAAACTTCAACTCCAACAATCACACCCTTTTTGAATCCTGTGACCAGGCAGTCCAATCAACCAGACAGCTC AGGAAGATCAGAAGAAAACAATGGGGAGCTATTACGTGCCAGCAGCAGATCTTGCATGTGTGGAAGAAGACATTTTCTTGAAGCAGCATCTACCGCTTTA TTTCCTATATGTCCTTCAATCGCTTCTGATAATTTACAGCCTCGTTACAAGACAGTGTTAAATAGAGTCCACCCTCCAAGACCAGGTTGGTACGATGAAT TTTATGCATCTGTATTAAATTCTACCGTGGAACCCTATGAAGCAGAGGTTGCTGTTTACAAGACACAGCTTTTTACTAATTTGAGAGGAAAGGCCGAGAA AGTGTTGGAGATTGGCATAGGCACTGGCCCTAACCTCAAATACTATGCCAATAGTGCTGATATCCAGGTTTACGGTGTGGATCCTAACACAAAGATGGAA AAATTTGCGCAGGAATCAGCAGTGGCTGCTGGTCTACCACTTTCAAACTTTGAATTTATACAAGCAGTTGGGGAAGCTATACCATTAAATGATGCTTCTG TTGATGCTGTCGTGGGCACTCTTGTACTCTGCTCCGTTAAAGAAGTTGGCCAGACACTACAAGAGGTAAAGAGAGTGCTTAAACCTGGTGGGCTTTACCT ATTTGTGGAGCATGTGGCTGCAAAAGATGGAACAATTCTTAGACTCCTGCAAAGTGCCCTCGATCCATTACAACAGACAGTTGCTGATGGTTGTCACCTA TCTAGGGATACAGGAAAGGAAATTCTTAAAGCTGGTTTCTCATCTGTCGATTTAAGCATGGCTTTCCTGTCTAATGCCTTGATTATAAATCCCCATGTGT ATGGAATAGCCAGCAAGTAA
AA sequence Show only first row Show all	>Potri.008G088500.1 pacid=42807922 polypeptide=Potri.008G088500.1.p locus=Potri.008G088500 ID=Potri.008G088500.1.v4.1 annot-version=v4.1 MFKFIYDINFHRRLNIPAPPVRMSLQSSLFTFSFTTPCSSSSHETSTPTITPFLNPVTRQSNQPDSSGRSEENNGELLRASSRSCMCGRRHFLEAASTAL FPICPSIASDNLQPRYKTVLNRVHPPRPGWYDEFYASVLNSTVEPYEAEVAVYKTQLFTNLRGKAEKVLEIGIGTGPNLKYYANSADIQVYGVDPNTKME KFAQESAVAAGLPLSNFEFIQAVGEAIPLNDASVDAVVGTLVLCSVKEVGQTLQEVKRVLKPGGLYLFVEHVAAKDGTILRLLQSALDPLQQTVADGCHL SRDTGKEILKAGFSSVDLSMAFLSNALIINPHVYGIASK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69523			S-adenosyl-L-methionine-depend...		Potri.008G088500 [exp]	0	1
					Potri.014G179200 [exp]	2.00	0.9513
AT5G59750			DHBP synthase RibB-like alpha/...		Potri.001G234900 [exp]	2.23	0.9602
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	3.46	0.9594
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	6.70	0.9504
AT3G32930			unknown protein		Potri.003G216700 [exp]	10.00	0.9319
AT5G37360			unknown protein		Potri.019G023700 [exp]	10.19	0.9385
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	10.19	0.9419
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Potri.011G009600 [exp]	10.58	0.9443
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	10.95	0.9350	Pt-FTSZ.1
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.014G052000 [exp]	12.80	0.9074

Compare expression of checked genes

Potri.008G088500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.