Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 244 / 5e-83 Protein of unknown function (DUF962) (.1) AT1G74440 238 / 4e-80 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G166500 [exp] 306 / 2e-107 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036771 [exp] 280 / 7e-97 AT1G18720 250 / 3e-85 Protein of unknown function (DUF962) (.1) Lus10030447 [exp] 278 / 3e-96 AT1G18720 256 / 2e-87 Protein of unknown function (DUF962) (.1) Lus10001646 [exp] 221 / 7e-74 AT1G18720 246 / 3e-83 Protein of unknown function (DUF962) (.1) Lus10021661 [exp] 216 / 7e-72 AT1G18720 242 / 8e-82 Protein of unknown function (DUF962) (.1) Lus10021660 [exp] 176 / 7e-56 AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 120 / 5e-35 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1) Lus10001647 [exp] 64 / 4e-13 AT1G18720 62 / 7e-13 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [poplar] [flax] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Potri.008G088800.1 pacid=42806756 polypeptide=Potri.008G088800.1.p locus=Potri.008G088800 ID=Potri.008G088800.1.v4.1 annot-version=v4.1 ATGGGAAAGTATGGATTGATTGATCTAGAGAAGCACTTTGCATTCTATGGTGCATACCATAGTAACTCAATAAACATATTGATTCACATGATATTTGTTT GGCCAATCTTTTTCACCGCTTGTTTGATTCTTTATTTCACACCTCCTCTGTTTAGTCTCCCTCAAATCCAGTTATCTCTGTTTGGTTATGGTGTTGTTCT CCTTTTTAACGTTGGGTTCTTTCTTGTTTTGATCTATGCTTTGTTTTATATCTGTTTGGACCCAAAAGCTGGTTCCTTGGCTGCTTTGCTTTGTGCTTTT TGTTGGGTGGCTAGTTCTTTGGTGGCTGGTTGGCTCGGGTTCTCTCTTGCTTGGAAGGTTGTTCTGGTGGCTCAAATAGTTTGTTGGACTGGACAGTTCA TCGGGCATGGGGTCTTTGAGAAACGAGCCCCTGCACTTTTGGATAACCTCATTCAAGCCTTTATAATGGCTCCCTTCTTTGTGCTGCTGGAGGCTCTTCA AACCTCTTTCGGTTATGAACCGTACCCAGGGTTCCATGCTAGTGTTCAAGCAAGGATTGATGCTGAAATAAAAGAGTGGCGAGAGAAGAAGCTTAAGTTG CTTAGTTAA
AA sequence Show only first row Show all	>Potri.008G088800.1 pacid=42806756 polypeptide=Potri.008G088800.1.p locus=Potri.008G088800 ID=Potri.008G088800.1.v4.1 annot-version=v4.1 MGKYGLIDLEKHFAFYGAYHSNSINILIHMIFVWPIFFTACLILYFTPPLFSLPQIQLSLFGYGVVLLFNVGFFLVLIYALFYICLDPKAGSLAALLCAF CWVASSLVAGWLGFSLAWKVVLVAQIVCWTGQFIGHGVFEKRAPALLDNLIQAFIMAPFFVLLEALQTSFGYEPYPGFHASVQARIDAEIKEWREKKLKL LS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18720			Protein of unknown function (D...		Potri.008G088800 [exp]	0	1
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.002G240900 [exp]	2.00	0.7167
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.016G056500 [exp]	2.64	0.7484	HSFB3.2
AT5G51830			pfkB-like carbohydrate kinase ...		Potri.015G134900 [exp]	5.91	0.6958
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	10.48	0.6808
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.016G129900 [exp]	18.33	0.6917	ASNAP.2
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	23.62	0.7032
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Potri.012G119200 [exp]	27.34	0.6479
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Potri.001G442400 [exp]	27.64	0.6995	LSD1.1
AT3G51130			unknown protein		Potri.005G117200 [exp]	30.59	0.6748
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221000 [exp]	31.17	0.6464

Compare expression of checked genes

Potri.008G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.