Plant FIBer expression Database

Potri.008G089401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G166100
[exp]
123 / 2e-33 AT2G03150 368 / 4e-106 embryo defective 1579, ATP/GTP-binding protein family (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G089401.1 pacid=42808276 polypeptide=Potri.008G089401.1.p locus=Potri.008G089401 ID=Potri.008G089401.1.v4.1 annot-version=v4.1
ATGTCAAGTGCAGATCAGCCGGATGACGAAAAAACTGTCATGGAGGAGGATACTTCTGTTGATCCTATTAATAAGCCAAAGCAGGAAGAAGAAAGTGAAG
CTGAGGAAGACCCAGAGGAAGATCCTGAAGAATGTGAAGAAATGGACGATCCTGAAGAATATGAACAAATGGATGACCCTGGGCATGACTCATCTAACGA
GAAAAAAGATGAGGGGAAGACCAGTGGGGATGCTGAGCATGAACCTCGGGCTGGTGATGAAAGAGACAAGACAGAGGAAGCAATTGAGGACAAAACGGAC
TTGAAAGATGCAGGTACAAAACCCAAGTCTGTTGCAGATTTGTCTGAAAAAAAAGATGACAAGGTGGAGACAGAAGAAAGAGCTGTCTGGGAAGGAGGCT
GTGATTGA
AA sequence
>Potri.008G089401.1 pacid=42808276 polypeptide=Potri.008G089401.1.p locus=Potri.008G089401 ID=Potri.008G089401.1.v4.1 annot-version=v4.1
MSSADQPDDEKTVMEEDTSVDPINKPKQEEESEAEEDPEEDPEECEEMDDPEEYEQMDDPGHDSSNEKKDEGKTSGDAEHEPRAGDERDKTEEAIEDKTD
LKDAGTKPKSVADLSEKKDDKVETEERAVWEGGCD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G089401
[exp]
0 1
AT5G17620 unknown protein Potri.013G072300
[exp]
1.41 0.9542
AT1G06820 CCR2, CRTISO CAROTENOID AND CHLOROPLAST REG... Potri.006G199600
[exp]
1.41 0.9448
AT4G24520 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTA... Potri.002G106566
[exp]
2.44 0.9423
AT5G21930 ATHMA8, HMA8, P... ARABIDOPSIS HEAVY METAL ATPASE... Potri.006G220150
[exp]
2.44 0.9323
AT2G03380 Pentatricopeptide repeat (PPR)... Potri.008G092900
[exp]
4.89 0.9226
AT1G54850 HSP20-like chaperones superfam... Potri.013G024900
[exp]
7.74 0.9176
AT2G40770 zinc ion binding;DNA binding;h... Potri.019G060300
[exp]
8.66 0.9144
AT2G01570 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSO... Potri.017G018801
[exp]
10.81 0.9214
AT5G40645 RPM1-interacting protein 4 (RI... Potri.001G338500
[exp]
11.83 0.9149
AT2G40770 zinc ion binding;DNA binding;h... Potri.019G060126
[exp]
12.72 0.8992

Potri.008G089401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.