Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG942
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26760 646 / 0 SDG35, ATXR1 SET domain protein 35 (.1) AT2G17900 61 / 2e-09 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT2G19640 55 / 5e-08 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT5G06620 53 / 2e-07 SDG38, ATXR4 SET domain protein 38 (.1) AT3G21820 52 / 5e-07 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT1G43245 42 / 0.0007 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173100 [exp] 58 / 1e-08 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.001G071700 [exp] 57 / 2e-08 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.017G038700 [exp] 50 / 2e-06 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.006G196566 [exp] 43 / 0.0001 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.005G193500 [exp] 43 / 0.0005 AT1G43245 262 / 2e-79 SET domain-containing protein (.1) Potri.007G033000 [exp] 42 / 0.0009 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037155 [exp] 650 / 0 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10031573 [exp] 60 / 2e-09 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10015102 [exp] 59 / 4e-09 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10029712 [exp] 56 / 4e-08 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10026687 [exp] 55 / 1e-07 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 54 / 2e-07 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10013535 [exp] 51 / 1e-06 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10026725 [exp] 43 / 0.0007 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10025508 [exp] 43 / 0.0007 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00515 [poplar] [flax] TPR_1 Tetratricopeptide repeat CL0020 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.008G089500.1 pacid=42806054 polypeptide=Potri.008G089500.1.p locus=Potri.008G089500 ID=Potri.008G089500.1.v4.1 annot-version=v4.1 ATGCAAGAGCTCAGATTCAAAGCCACTGAGCTTCTTCTCAGAGAAGAATGGCAAGAATCCGTTCAAGTCTACACCCAGTTCATCAATCTCTGTCAAGACC AGATCTCTGTCAAGTCACATCAAAATCACCCAGACCCAGACCTCCTCACCAAGCTTCAAAAATCCCTCTGCTTAGCCCTGTCAAACCGTGCTGAAGCACT GTCCAGGCTTAGAGATCTCACGGGAGCGCTCAAAGATTGTGATCAAGCATTGAAAATTGAGAGTACACATTTCAAGTCCCTTGTTTGCAAAGGCAAAATC TTGCTTAGTTTGAACAGGTACTCAATGGCCTTGGATTGCTTCAAAACTGCTGTTCTTGATCCACAGGCTAGTGGAAACCTTGAAACTCTGAATGGGTACG TGCAGAAATGCAAGAAACTGGAATTTCAATCGAGGACTGGAGCTTTTGATCTCTCTGATTGGATCCTAAGTGGGTTTCGTGGCAAATCTCCAGAGCTTGC TGAGTACACTGGTCCAGTGCAGATTAAGAGGTCTGAGCTCAGTGGAAGAGGCCTGTTTGCAACAAAGAACATTGATGCAGGGACTTTGCTGTTAGTGACT AAAGCAATTGCCACAGAGAGAGGTATATTATCAAGTGAAGATTCTTGTGAGAATGCACGGTTGGTCATGTGGAAGAATTTTGTTGATAAAGTTGTAGATT CAGCTACTATGTGTGAAAGAACTCACCATTTGATTAGCACATTGTCAAGTGGTGAAGATGAGGATAAGCTTGAGGCTCCTGAAATGAGTCTATTTAGGCC TGAGGCAGAGGAGATTGGAGAGTTAAATGAGAAGCTTGATAAGGTTAAAATTTTGAACGTATTGGATGTGAATTCTCTTGTTGAGGAATCAGTTTCAGCT AAAGTCTTAGGGAGGAATAGTGATTATTATGGTGTTGGATTATGGGTTCTGGCTTCATTCATTAACCATTCATGTAATCCTAATGCTAGACGCTTGCATG TTGGGGATCATGTGCTAGTTCATGCTTCCAGGGATGTTAAGGCGGGTGAAGAAATCACATTTGCATATTTTGACGTGCTTTCTCCATTAAGCAAGCGAAA CGAAATGTCAAAGACATGGGGTTTTCATTGCAGTTGCAAGAGGTGCAAATTTGAAGAAGAAATGTGTTCTAAGCAAGAGATGAAGGAAATAGAGATAGGA CTTGAAAGAGGGATTGATGTGGGCAGTGCAATTTTTAGGCTAGAGGAAGGTATGAGAAGATGGATGGTGAGAGGGAGGGGGAAAGGCTATATGAGGGCAT CATTTTGGGCTGCATATTTTGAAGCTTATGGCTCTGAGAAATCTGTGACGAGGTGGGGAAGACGAATTCCGGCTGTCGATATAGTAGTGGATAGTGTTGC AGAAGCTGTGGGGTGTGATGAGAGAGTACTGAAGGTTTTTATGCAAGCATTTAAAGGAAACGGCGTTAGCTTGGTGGATATGGAGAAATCACTCAAGTTG GGAAGAGGAGTACATGGAAAGGTGGTCAAGAAACAACAAGCCTTAAGGTCCCTCCTTGACTTTGGCACTCATGATGCTTGA
AA sequence Show only first row Show all	>Potri.008G089500.1 pacid=42806054 polypeptide=Potri.008G089500.1.p locus=Potri.008G089500 ID=Potri.008G089500.1.v4.1 annot-version=v4.1 MQELRFKATELLLREEWQESVQVYTQFINLCQDQISVKSHQNHPDPDLLTKLQKSLCLALSNRAEALSRLRDLTGALKDCDQALKIESTHFKSLVCKGKI LLSLNRYSMALDCFKTAVLDPQASGNLETLNGYVQKCKKLEFQSRTGAFDLSDWILSGFRGKSPELAEYTGPVQIKRSELSGRGLFATKNIDAGTLLLVT KAIATERGILSSEDSCENARLVMWKNFVDKVVDSATMCERTHHLISTLSSGEDEDKLEAPEMSLFRPEAEEIGELNEKLDKVKILNVLDVNSLVEESVSA KVLGRNSDYYGVGLWVLASFINHSCNPNARRLHVGDHVLVHASRDVKAGEEITFAYFDVLSPLSKRNEMSKTWGFHCSCKRCKFEEEMCSKQEMKEIEIG LERGIDVGSAIFRLEEGMRRWMVRGRGKGYMRASFWAAYFEAYGSEKSVTRWGRRIPAVDIVVDSVAEAVGCDERVLKVFMQAFKGNGVSLVDMEKSLKL GRGVHGKVVKKQQALRSLLDFGTHDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Potri.008G089500 [exp]	0	1	SDG942
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.001G177100 [exp]	1.41	0.9752
AT1G04030			unknown protein		Potri.002G258501 [exp]	2.82	0.9740
AT2G33400			unknown protein		Potri.010G067300 [exp]	3.87	0.9724
AT3G06840			unknown protein		Potri.010G010600 [exp]	4.35	0.9567
AT4G31840		AtENODL15	early nodulin-like protein 15 ...		Potri.006G184100 [exp]	4.58	0.9665
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	4.89	0.9658
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031700 [exp]	5.09	0.9624
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	5.65	0.9695
AT3G15550			unknown protein		Potri.001G175500 [exp]	5.91	0.9674
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	8.36	0.9650

Compare expression of checked genes

Potri.008G089500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.