Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04660 1178 / 0 APC2 anaphase-promoting complex/cyclosome 2 (.1) AT4G02570 68 / 2e-11 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) AT5G46210 56 / 9e-08 CUL4, ATCUL4 cullin4 (.1) AT1G02980 53 / 8e-07 ATCUL2, CUL2 cullin 2 (.1) AT1G26830 50 / 7e-06 CUL3A, ATCUL3A, ATCUL3 cullin 3A, cullin 3 (.1) AT1G43140 50 / 7e-06 Cullin family protein (.1) AT1G69670 49 / 2e-05 CUL3B, ATCUL3B ARABIDOPSIS THALIANA CULLIN 3B, cullin 3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G217300 [exp] 64 / 3e-10 AT4G02570 1272 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.010G023800 [exp] 64 / 5e-10 AT4G02570 1265 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.003G115500 [exp] 58 / 3e-08 AT4G02570 1209 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.004G132900 [exp] 57 / 7e-08 AT5G46210 1211 / 0.0 cullin4 (.1) Potri.011G084400 [exp] 57 / 8e-08 AT5G46210 1250 / 0.0 cullin4 (.1) Potri.001G117200 [exp] 55 / 3e-07 AT4G02570 1226 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Potri.008G148300 [exp] 51 / 4e-06 AT1G26830 1342 / 0.0 cullin 3A, cullin 3 (.1) Potri.010G093200 [exp] 49 / 1e-05 AT1G26830 1345 / 0.0 cullin 3A, cullin 3 (.1) Potri.008G089100 [exp] 0 / 1 AT2G04660 0 / 1 anaphase-promoting complex/cyclosome 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026619 [exp] 1209 / 0 AT2G04660 1167 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Lus10030444 [exp] 1099 / 0 AT2G04660 1059 / 0.0 anaphase-promoting complex/cyclosome 2 (.1) Lus10028917 [exp] 62 / 3e-09 AT4G02570 1290 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10004334 [exp] 62 / 3e-09 AT4G02570 1279 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10024562 [exp] 61 / 5e-09 AT4G02570 1271 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10032200 [exp] 61 / 6e-09 AT4G02570 1269 / 0.0 AUXIN RESISTANT 6, cullin 1 (.1.2.3.4) Lus10037188 [exp] 57 / 4e-08 AT1G26830 1328 / 0.0 cullin 3A, cullin 3 (.1) Lus10012835 [exp] 54 / 5e-07 AT1G26830 1320 / 0.0 cullin 3A, cullin 3 (.1) Lus10030485 [exp] 53 / 1e-06 AT1G26830 1317 / 0.0 cullin 3A, cullin 3 (.1) Lus10036739 [exp] 53 / 1e-06 AT1G26830 1335 / 0.0 cullin 3A, cullin 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00888 [poplar] [flax] Cullin Cullin family CL0123 [poplar] [flax] HTH PF08672 [poplar] [flax] ANAPC2 Anaphase promoting complex (APC) subunit 2
Representative CDS sequence Show only first row Show all	>Potri.008G089600.6 pacid=42808050 polypeptide=Potri.008G089600.6.p locus=Potri.008G089600 ID=Potri.008G089600.6.v4.1 annot-version=v4.1 ATGGAAGAATCAACTCTATCATTAGTAAGCAATCTAGAAATTCTAGACACACTCAGCGCTGATTCAGTTCAAGAAATTGTTGGCAGCTATGGCAGTTTCT GTTCCGCCACCCTATCTCTTCTCCACGGAGGCGACGCCTCCGATCTCTTCTCCCACGTTCAAATCCTCTGCAAGCACGGCCTCCTTTCTCTCGTTCGCGA TTTCTTTCTCAAGTCACTAGAGGAAGCTTTCGAGAGAAACCTAGCGTCAAAATTTTGGCGGCATTTTGATTGTTATAGCAATGTAGGAGCTAATTATGAA ATTGAGTTGCAGCAAGTTTTGTGCATAGCACTTGAAGAGATTTCGTTAGAGAAACAGTATCAGGAGAAGTGTTTGTTACTGTTAGTTCGTGCTTTATTAC TGGAAGGAAAAACTGATTCTGATGTCGAAAGAGAATATCTTTTTTCCAAGTATCAATTGATGGTTTCTTCAGTTCTAATGGCTAGTCTTCCTCGCCATTT TCCTGAACTACTACACTGGTATTTTAAGGGAAGGCTGGAGGAGCTGAGTACAATAATGGATGGAGAGTTTAATGGTGGTGATGATGATGCTTCTCAAGAT AAAGATGACATGGATTTAGATGAGATGGGGAAAATGTTACATAGGAATGGTGCGATGGATATTGATGAAAGCTGCCTACAAGGGAAATTTACAGAGAATA ACAATTTAGTGAAGAATATTGGAAAGGTTGTACGTGACCTCAGAAGTCTTGGATTCACATCTATGACTGAAGATGCCTATGCTTCAGCCATCTTTTTGCT TCTGAAGGCTAAAGTACATGATCTGGCCGGCGACGATTACAGGGCTTCAGTTTTGGGCTCCATTAATGAGTGGATCAAGGATGTGCCTCTCCAATTCTTG CATGCACTCCTTGCTTATCTTGGTGAGACTACTAGCTATTATAGCCCTTCACCAGGTCACAGGTCACCTCTTGCTTCTCACCCTTCAGCTTGTTATCCTG CAATTAATGCTCCCTCTGAAGGACTTGTTAGATGGCATTTACGACTAGAGTATTTTGCTTATGAAACATTGCAAGATTTGAGGATTTCCAAACTATTTGA GATTATTGTTGACTATCCTGATAGCTCTCCTGCAATCGAAGACTTGAAGCAGTGCCTTGACTATACTGGACAGCATTCTAAACTTGTGGAGTCTTTTATT TCTGCATTGAGATATCGCTTGCTCACTGCAGGTGCCTCAACCAATGATATATTGCATCAGTATGTTTCGACTATTAAAGCACTGCGGACAATTGACCCGG CTGGTGTCTTTCTTGAAGCTGTTGGTGAACCAATAAAAGACTATTTAAGGGGTAGAAAAGATACAATAAAATGCATTGTCACCATGCTCACTGATGGGAC TGGTGGGAATCCAAATGGATCTGGAATTACTGGCGATAGTCTTCTTGAAGAATTAAATAGGGATGAGGAAAGTCAGGAGAATGTTGGTGCTGATGATGAT TTCAACACAGATGACAAGCAGGCATGGGTCAATGCTGCAAGCTGGGTGCCTGATCCTGTCGAGGCTGATCCATTGAAGGGCAGCAGGAATCAAAGGAAGG TTGACATACTAGGGATGATTGTCGGCATAATTGGTTCAAAAGACCAACTTGTCAATGAATACCGTGTTATGCTGGCTGAAAAGCTTCTCAACAAATCTGA TTATGATATTGACTCGGAAATACGTACTTTAGAACTCCTCAAGATACATTTTGGAGAGAGTAGTATGCAAAGGTGTGAAATTATGCTTAACGATCTTATT GATTCCAAGAGGACAAACCACAATATTAAAGCAACAATTAAGTCAGCTCAAACAGGTTCAGAACCAGCAGAAACAGGGGCATCCATGGATATCCTTAATG CTACAATCCTATCTTCAAATTTTTGGCCTCCAATCCAGGATGAGGCTCTTAATGTACCTGAACCTGTAAACCAGCTACTCACTGATTATGCAAAAAGATT CCATGAAATCAAGACCCCTCGTAAGCTACTCTGGAAGAAAAATCTTGGAACAGTCAAGTTGGAGTTGCAATTTGAAGATAGAACATTGCAGTTAAGCGTG GCTCCCATACATGCTGCAATTATCATGCAATTTCAAGACCAAACAAGTTGGACCTCAAATAGGCTTGCTACTGTTATTGGAGTACCTGTGGATGTGTTGA ATCGGAGGATAAATTTTTGGATAAGCAAGGGAATTCTTACAGAATCACTGGGCAAAGACTTGAATGATCATGTATTTACCCTAGTGGAAGGCATTGTCGA TGCTGGCAAAAACAGTGGCAATACTGGTAGTTGTGAGGAGTTGTTAGGAGGTGATGAGGAGGGAGAGAGATCTGTAGCCTCTGTCGAGGACCAGATACGC AAGGAAATGACCATCTACGAGAAGTTTATAATGGGCATGCTCACCAATTTCGGCAGCATGGCATTGGATCGCATTCACAATACTCTCAAGATGTTTTGCG TAGCTGATCCTCCTTACGACAAGTCACTCCAACAATTGCAAAGCTTTTTATCAGGTCTAGTTTCTGAAGAGAAGTTAGAACTTAGAGATGGGATGTACTT CTTGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.008G089600.6 pacid=42808050 polypeptide=Potri.008G089600.6.p locus=Potri.008G089600 ID=Potri.008G089600.6.v4.1 annot-version=v4.1 MEESTLSLVSNLEILDTLSADSVQEIVGSYGSFCSATLSLLHGGDASDLFSHVQILCKHGLLSLVRDFFLKSLEEAFERNLASKFWRHFDCYSNVGANYE IELQQVLCIALEEISLEKQYQEKCLLLLVRALLLEGKTDSDVEREYLFSKYQLMVSSVLMASLPRHFPELLHWYFKGRLEELSTIMDGEFNGGDDDASQD KDDMDLDEMGKMLHRNGAMDIDESCLQGKFTENNNLVKNIGKVVRDLRSLGFTSMTEDAYASAIFLLLKAKVHDLAGDDYRASVLGSINEWIKDVPLQFL HALLAYLGETTSYYSPSPGHRSPLASHPSACYPAINAPSEGLVRWHLRLEYFAYETLQDLRISKLFEIIVDYPDSSPAIEDLKQCLDYTGQHSKLVESFI SALRYRLLTAGASTNDILHQYVSTIKALRTIDPAGVFLEAVGEPIKDYLRGRKDTIKCIVTMLTDGTGGNPNGSGITGDSLLEELNRDEESQENVGADDD FNTDDKQAWVNAASWVPDPVEADPLKGSRNQRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQRCEIMLNDLI DSKRTNHNIKATIKSAQTGSEPAETGASMDILNATILSSNFWPPIQDEALNVPEPVNQLLTDYAKRFHEIKTPRKLLWKKNLGTVKLELQFEDRTLQLSV APIHAAIIMQFQDQTSWTSNRLATVIGVPVDVLNRRINFWISKGILTESLGKDLNDHVFTLVEGIVDAGKNSGNTGSCEELLGGDEEGERSVASVEDQIR KEMTIYEKFIMGMLTNFGSMALDRIHNTLKMFCVADPPYDKSLQQLQSFLSGLVSEEKLELRDGMYFLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04660		APC2	anaphase-promoting complex/cyc...		Potri.008G089600 [exp]	0	1
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	2.82	0.8017
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	5.00	0.8500
AT3G47630			unknown protein		Potri.001G076200 [exp]	7.21	0.8190
AT4G01810			Sec23/Sec24 protein transport ...		Potri.014G112600 [exp]	10.00	0.7796
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	10.95	0.8369
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	19.51	0.8297
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Potri.005G035300 [exp]	24.79	0.8162
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	28.24	0.8037
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	29.79	0.8045
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Potri.014G050200 [exp]	31.46	0.7927

Compare expression of checked genes

Potri.008G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.