Plant FIBer expression Database

Potri.008G089800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26761 469 / 4e-163 Arabinanase/levansucrase/invertase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036775
[exp]
447 / 3e-154 AT1G26761 441 / 1e-152 Arabinanase/levansucrase/invertase (.1)
Lus10037153
[exp]
446 / 4e-154 AT1G26761 449 / 6e-156 Arabinanase/levansucrase/invertase (.1)
PFAM info
Representative CDS sequence
>Potri.008G089800.2 pacid=42807197 polypeptide=Potri.008G089800.2.p locus=Potri.008G089800 ID=Potri.008G089800.2.v4.1 annot-version=v4.1
ATGGAAGTCACTCTATCATCAGCAGCTTCAGCTTCAACACTGAAAAACGCTAACGTCTTTGCAACTTCCATCACTCAAAAATTAAACACCTCGATCCTAA
CATGGCCTTCTTCTACAAATCCCAAAGTGCTACATCTTTATTTCCCCAAGAATCCTGTCCAAAGAATCAACACCTTTCTTTCTCTCACTCGTTGCTCCAC
AAAACCAGACACCAACACAAACAACGAAACTGACCAAACTTCTACCCCTGAATCCAATTCAAATCCAGAGCCCCAATACCCATCAACAACCATTTCTTCA
AATGATTCGCTGCCCTCCAATTCTTTGCCATCACAGTCATTATCTAGGGGATTGGTGTTTGATTTGGGTCCCTCAAATTCATGGGACGGCAAAGAAATTG
GGTCACCGGTGGTGAAAAGATTCTTGAGTGACGAGGAAGAGAGATGGTACATGTGGTACCATGGGAATTCTAGTCAAAACTCAGGCTCAGCAGATTCAAT
AGGACTAGCAGTTTCAAGCAATGGAATTCACTGGGAAAGAGGGGTAGGGCCGGTTAGCTCCAGCGGTGATGTGGGTTCGGTTATGAAGTGTGGTCAAGAT
TGGTGGGCATTTGATACAATGAGCATTAGGCCTGGTGAAGTGGTTGTAATGTCAAGTTCAAAAGTCAGAGCTTCAAGTGCTGTTTACTGGCTTTACTACT
CTGGTTTTAGTTCTGAGAAGGTGGATTATACGGATGATGATTCCTTGGTGTTCAGTTTAGAAAACCCAGAAAGGTTTTGCCTTGATAATGTGAATAATGG
GAATGTTGATAAAGGGAGGATCTTTAAGTCTCTGCCTGGTCTGGCAATGAGTCAGGATGGGAGGCATTGGGCTAGAATTGAAGGGGAACATCACAGTGGA
GCTCTGTTTGACGTGGGGTCTGAGAGAGAGTGGGATTCTTTGTTCATTGCTGGTCCACGGGTTGTTTTTCATGGTAATAGTGATCTTAGAATGTATTATC
ACTCGTTTGATGTGGAAAGTGGGCAATTTGGTATTGGGATTGCAAGGTCAAGAGATGGGATTAATTGGATGAAGTTGGGGAAGATAATTGGAGGAGGAAA
AATCAGTTCTTTTGATGAGTTTGGTGCACTAAATGCATGTGTTGTGAGGAACAAGAAAGATGGGAGGTATTTGATGGCTTATGAGGGTGTCGCTGCTGGT
GGAAAGAGGAGTATTGGATTGGCAGTGTCTCCTGATGGATTAAGAGATTGGAGGAGATTTCAAGACGAGGCAGTGCTGGAGTCATCTGTGAAAGATGGAT
GGGATAACAAGGGAGTTGGATCACCCTGTTTGGTTCAAATGGACGGGGAAGTTGATGAATGGAGGTTGTATTACAGAGGAGTTGGCAATGAGGGAAGGAC
TGGAATTGGAATGGCAATTTCTCAAGGAAATGATGTTAGTAGTTTTAGACGATGGACAGGATTCCATTTATAA
AA sequence
>Potri.008G089800.2 pacid=42807197 polypeptide=Potri.008G089800.2.p locus=Potri.008G089800 ID=Potri.008G089800.2.v4.1 annot-version=v4.1
MEVTLSSAASASTLKNANVFATSITQKLNTSILTWPSSTNPKVLHLYFPKNPVQRINTFLSLTRCSTKPDTNTNNETDQTSTPESNSNPEPQYPSTTISS
NDSLPSNSLPSQSLSRGLVFDLGPSNSWDGKEIGSPVVKRFLSDEEERWYMWYHGNSSQNSGSADSIGLAVSSNGIHWERGVGPVSSSGDVGSVMKCGQD
WWAFDTMSIRPGEVVVMSSSKVRASSAVYWLYYSGFSSEKVDYTDDDSLVFSLENPERFCLDNVNNGNVDKGRIFKSLPGLAMSQDGRHWARIEGEHHSG
ALFDVGSEREWDSLFIAGPRVVFHGNSDLRMYYHSFDVESGQFGIGIARSRDGINWMKLGKIIGGGKISSFDEFGALNACVVRNKKDGRYLMAYEGVAAG
GKRSIGLAVSPDGLRDWRRFQDEAVLESSVKDGWDNKGVGSPCLVQMDGEVDEWRLYYRGVGNEGRTGIGMAISQGNDVSSFRRWTGFHL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G26761 Arabinanase/levansucrase/inver... Potri.008G089800
[exp]
0 1
AT5G52420 unknown protein Potri.012G143300
[exp]
3.46 0.9710
AT4G13220 unknown protein Potri.002G251800
[exp]
4.35 0.9769
AT2G33800 EMB3113 EMBRYO DEFECTIVE 3113, Ribosom... Potri.004G045700
[exp]
6.78 0.9761
AT1G79850 PDE347, CS17, P... PLASTID RIBOSOMAL SMALL SUBUNI... Potri.001G184000
[exp]
7.93 0.9756
AT5G35100 Cyclophilin-like peptidyl-prol... Potri.006G189900
[exp]
10.77 0.9729
AT4G13510 ATAMT1;1, AMT1;... ARABIDOPSIS THALIANA AMMONIUM ... Potri.008G173800
[exp]
10.81 0.9650 3,Pt-AMT1.5
AT5G02120 PDE335, OHP PIGMENT DEFECTIVE 335, one hel... Potri.006G088200
[exp]
11.53 0.9598
AT1G64510 Translation elongation factor... Potri.001G088300
[exp]
14.49 0.9710
AT1G74730 Protein of unknown function (D... Potri.015G065100
[exp]
14.96 0.9657
AT1G42550 PMI1 plastid movement impaired1 (.1... Potri.002G006100
[exp]
15.42 0.9601

Potri.008G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.