Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 744 / 0 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 674 / 0 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 607 / 0 FUT7 fucosyltransferase 7 (.1) AT1G14100 604 / 0 FUT8 fucosyltransferase 8 (.1) AT1G14080 574 / 0 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15390 545 / 0 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15370 534 / 0 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT2G15350 523 / 0 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 517 / 3e-180 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 460 / 3e-157 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191500 [exp] 631 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 616 / 0 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 614 / 0 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 598 / 0 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 571 / 0 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 564 / 0 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 783 / 0 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10037152 [exp] 633 / 0 AT2G03220 564 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 528 / 0 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 474 / 2e-162 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 449 / 3e-152 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10029049 [exp] 443 / 6e-150 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10026128 [exp] 403 / 1e-134 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 387 / 1e-128 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 373 / 4e-123 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 370 / 6e-122 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [poplar] [flax] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G090000.2 pacid=42806357 polypeptide=Potri.008G090000.2.p locus=Potri.008G090000 ID=Potri.008G090000.2.v4.1 annot-version=v4.1 ATGGATCTGAAATCTTCCACAAGGAGGCGATCACCACCGTCGGAGGACACAGATCAACAGCTAGCCCAAAACTCAAAAATGCAAGCGAAGAGATTTGGAT CCAATGCGATCACGTTCACCCAGATCTTTGCTTATTGCTTGGTAGCTTTGCCAATAATATTCGCAATATCATTGATCTTTAGACACCCGTCGTCTGATCG AACGATGGGGTTCGCGGATGCTAGAGTTCTTGAAAACAGAGGAGTCAAGCAGAATGCCACGCCAATTGAAGCAGGCGGCTCAGAGGGCGTTTTGTTTCAG CACGCTGACAAGTATAATGGCAAACTGCTTGGAGGGCTTCTTGCGGATGGGTTTGACGAAGCTGCTTGCACGAGTAGGTACAGTTCATTTTTATATGGCA AAATTTCTCTCCATAAGCCTTCATCATATCTCATTTCGAGACTCAGAAGCTACGAGGATCTTCATAAACGTTGCGGACCAAATACTCAATCCTACAATAA AGCCCTGGAACAACTCAAGTCTGGCAACAAAATAGGTTTGACTGACTGTAATTATATTGTGTGGATATCTTTTAGCGGCTTGGGCAACAGGATATTATCC CTAGCTTCAACATTTCTTTATGCTCTCCTGACAAATAGAGTCCTGCTTGTTGACCAAGGAAAGGACATGGCAGATCTCTTCTGTGATCCGTTTCCTGATA AATCTTGGTTGCTGCCCAGGGACTTCCCTCTCATTGATCAATTCGACAGCTTTAATCAGAATTCTCCTCACTGTCATGGAAATATGCTAAAGAATAATGC CATAAACTCTTCAGCAATGTCAAAACCATCATATTTATACCTCCATTTAGTTCATGATTATGGCGATCATGATAAGCTTTTCTTCTGTGATGGAGAACAG TCTTTTCTTGAAAATGTCCCTTGGTTGATCATGAAAACAGATAACTACTATGTTCCTTCACTTTTCTTGATTCCATCTTTCGAGACAGAACTGAGCAACT TGTTTCCTGAGAAAGGAACTGTTTTCCACCACCTCGGACGGTACCTTTTCCACCCTTCAAATCATGTGTGGGGACTAATAACAAGGTACTATCGAACTTA CTTAGCCAAGGCTGATGAGAGAATTGGCATTCAGATAAGAACTTTTGATTCAAGACGTGGCCCCTTTAAACACGTCATGGATCAAATTTTAGCTTGTACT TTGAAAGAGAAGTTATTGCCTGCAGTAGACATGCAAGACTCCGTTGTCAATCCTTCTGAAAATGCCAAATTGAAGGCGGTTCTGGTGACATCCTTGCTTT CAGGGTATTCTGAAGATTTAAGGAACATGTACTGGGAACATCCAACCATGACTGGGGAAGTCGTTGGAGTCTACCAGCCTAGCCATGAGGAGTTTCAACA AACAGAAAAGCAGATGCACAACAGAAAAGCCTGGGCAGAAATGTACCTTCTCAGTTTGACTGATGTCTTGGTCACAAGTGCATGGTCAACATTTGGCTAT GTGGCTCAAGGTCTTGGAGGTTTGAGGCCATGGATCCTGTACAAGACTGAAAATGATACAGCCCCCGATCCCCCTTGTCGCCGGGCCATGTCGATGGAAC CTTGTTTTCATGCTCCTCCCTTTTATGACTGCAAGGCTAAGAAAGGAATTGATACAGGTACACTTGTTCCTCATGTGAGACACTGTGAGGATATCAGCTG GGGTCTGAAGGTGGTTGATGATCATGATGACTTATAG
AA sequence Show only first row Show all	>Potri.008G090000.2 pacid=42806357 polypeptide=Potri.008G090000.2.p locus=Potri.008G090000 ID=Potri.008G090000.2.v4.1 annot-version=v4.1 MDLKSSTRRRSPPSEDTDQQLAQNSKMQAKRFGSNAITFTQIFAYCLVALPIIFAISLIFRHPSSDRTMGFADARVLENRGVKQNATPIEAGGSEGVLFQ HADKYNGKLLGGLLADGFDEAACTSRYSSFLYGKISLHKPSSYLISRLRSYEDLHKRCGPNTQSYNKALEQLKSGNKIGLTDCNYIVWISFSGLGNRILS LASTFLYALLTNRVLLVDQGKDMADLFCDPFPDKSWLLPRDFPLIDQFDSFNQNSPHCHGNMLKNNAINSSAMSKPSYLYLHLVHDYGDHDKLFFCDGEQ SFLENVPWLIMKTDNYYVPSLFLIPSFETELSNLFPEKGTVFHHLGRYLFHPSNHVWGLITRYYRTYLAKADERIGIQIRTFDSRRGPFKHVMDQILACT LKEKLLPAVDMQDSVVNPSENAKLKAVLVTSLLSGYSEDLRNMYWEHPTMTGEVVGVYQPSHEEFQQTEKQMHNRKAWAEMYLLSLTDVLVTSAWSTFGY VAQGLGGLRPWILYKTENDTAPDPPCRRAMSMEPCFHAPPFYDCKAKKGIDTGTLVPHVRHCEDISWGLKVVDDHDDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Potri.008G090000 [exp]	0	1
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	2.44	0.9335
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.005G026900 [exp]	6.78	0.9047
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	8.94	0.9301
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	9.21	0.9345
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	14.07	0.8989
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	14.69	0.9100
AT3G52930			Aldolase superfamily protein (...		Potri.018G090100 [exp]	15.00	0.9229
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	15.09	0.9309
AT3G12110		ACT11	actin-11 (.1)		Potri.008G055500 [exp]	16.79	0.9287	ACT4,Pt-PEAC14.2
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	18.97	0.9273

Compare expression of checked genes

Potri.008G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.