Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69480 832 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 656 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 655 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 635 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 624 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 600 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 596 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 545 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 515 / 4e-172 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 352 / 1e-109 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 707 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 691 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 690 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 689 / 0 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 682 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 618 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 369 / 3e-116 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165400 [exp] 324 / 3e-106 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 333 / 2e-102 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 674 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 633 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 633 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 629 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 615 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 603 / 0 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 581 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 380 / 6e-126 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 373 / 2e-117 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10000203 [exp] 360 / 4e-117 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.008G090300.2 pacid=42806402 polypeptide=Potri.008G090300.2.p locus=Potri.008G090300 ID=Potri.008G090300.2.v4.1 annot-version=v4.1 ATGAAGTTCGGAAAGCATTTCAAGCAACAAAAGGTGCCAGAATGGACTGGTGCTTATATGGATTATAATGGTCTTAAAAGAATATTGGGAGAGATCTTGC AGTACAAGCAAAGCAGGCAGCCCTCGACACCTTTGAGAGCAGCAATGCAGCACAAATTAACTTCGCATAGACACTTCAGTGGACTAAACCCGCAATCTAC CAATCTCTCCAGTAAAGGCGATATTGAGGACCAAGTTATAGATGTTAACGCGTCGCCTGAAGAGGGTTCTAGAAAGTTATATTATAAGACTGAGTTCCTG AGGGAGTCTGAAGAAGGAGGCGAAATAGAGGCGAAGTTCTTTAAGAAACTTGATGAAGAACTCAACAACGTTAACACATTTTACAAGGATAAGTCCGAGG AGATGAAGCATGAAGCATTTTTGCTGAATAAGCAAATGGATGCCTTGATTGCCTTGCGGATCAAGGTGGATAACCCTCATTTTGACGGCTCTGATGCGAG GAAAAGTGATACAACTGGTGTCGCTACCACAAACCCCTTGAAGAGTCCAAGCAGAGATACAACTTCAGGAGTGGAGGATATGAATGTTGAACACGGAGTT GAGATTAGTAACGATTTTCAGCTGGAGAAATCCTCTTATGAACAGAGTGGAAGGGAGCATATGGAATTGACCAGTGAACTGGATAGAAGAACTGATTGTA ACCAAGAAGAGTCTACTCGTGGTCCAGAAGTAATTGAAGTGCAAGCCAGAGATCATGGTAATGCTCACCAAGAGAAGGACAACCTCACTGACTACAACGA AGATCCTTTGAAAATCCTTGAGCGCGTGAAGATTAACAACACTTTTAAATCTCCACTAGCAACCATAAAAGGTGTCTTTAAGGACTCAAAAGAAGAAGAG CTGAGCTTCAAGAAAGAGGAACTGAAGAAAGTTGAAGAGCGACTGAGAGTTGCACTAATCGAATTCTACCAGAAACTTCTTCTTCTAAAGCACTACAGTT ATATGAACCTTGCAGCATTTTCAAAGATCATGAAGAAGTATGAAAAGATCTCATCAAGGAGAGCTTCTAGATCATACATGAAAACATTGGACAACTCCTG CCTCGGCAACTCTGATGAGGTGAATGGTCTCCTTGAAAGGTTGGAGGCTACCTTCATCAAGCATTTTGCAAACTCAAATCGGAGGGAAGGTATGGACTCT TTGCGGCCAAAAGCAAAAAGGGAAAAGCACAGTGTAACATTCTTTTCAGGATTCTTTTCTGGTTGCTCAATTGCACTTCTGATTGCTGTTGTTTTGAGAA TACAAGCTCGAAAGCTTATGGATAAGGCTGAAGGTGCCTCATACATGGTCAACATTTTCCCACTTTACAGCTTATTTGCTTTTATAGTCCTGCATATACT CATTTATTCGGCAAACATATACTTCTGGAGGCAGTATCGGGTTAATTACCCATTTATATTTGGTTTCAAGCAAGGAACTGAGCTGGGACATCGAGACGTT TTCCTTTTGGGCACTGGTCTTGCAGTACTTGCACTATCCAGCTTCCTGGCAAATTTACACTTGGATTTGGGTTCTAAAGCTTCAAATTACAAAACAATCA CCGAACTCGTTCCTTTGGGCTTAGTCACCGTTGTTCTTGCCATCATCTTCTGCCCTTTCAACATCATATATCGTTCAAGTCGTTTCTTCTTTGTTCAGTG TTTGTTCCGCTGTATTTGTGCGCCGCTTTACAAGGTTAGACTTGCAGATTTTTTCTTGGCAGACCACGTTACCAGCCAGGTCCAAGCAATAAGAAGTATC GAGTTGTACATTTGCTATTATGGTTTAGGGGAATACTCCAGGAGGCAAAACAAATGTCATAGCCATGGTGCCTATAATGCTTTCTATTTTGTTGTTGCTG TAGTACCATTCTGGCTCCGCCTTCTGCAGTGTCTCCGTCGATTGTGTGAAGAGAAAGATGCAGTGCACGGATATAATGGTTTGAAATACTTCTTGACGAT TATTGCAGTTCTAATTAGAACCGCTTATGAACTAAAAAAGGGAAGGACATGGATGGTATTTGCATTGATCAGCTCAGCTGTTGCAGTAATTGTGAACACA TACTGGGATATTGCAGTAGATTGGGGGCTTTTGAGAAGAAAATCAAAGAATGCTTTTTTGAGAGACAAACTTGTGATTTCACATAAAAGTGTCTACTTTG CAGCTATTATAATGAATGTAGTTCTGAGGCTTGCTTGGATGCAATTGGTCATAGAATTTAATTTGCAGAGTATTCACAAAATGGCCGCGTGA
AA sequence Show only first row Show all	>Potri.008G090300.2 pacid=42806402 polypeptide=Potri.008G090300.2.p locus=Potri.008G090300 ID=Potri.008G090300.2.v4.1 annot-version=v4.1 MKFGKHFKQQKVPEWTGAYMDYNGLKRILGEILQYKQSRQPSTPLRAAMQHKLTSHRHFSGLNPQSTNLSSKGDIEDQVIDVNASPEEGSRKLYYKTEFL RESEEGGEIEAKFFKKLDEELNNVNTFYKDKSEEMKHEAFLLNKQMDALIALRIKVDNPHFDGSDARKSDTTGVATTNPLKSPSRDTTSGVEDMNVEHGV EISNDFQLEKSSYEQSGREHMELTSELDRRTDCNQEESTRGPEVIEVQARDHGNAHQEKDNLTDYNEDPLKILERVKINNTFKSPLATIKGVFKDSKEEE LSFKKEELKKVEERLRVALIEFYQKLLLLKHYSYMNLAAFSKIMKKYEKISSRRASRSYMKTLDNSCLGNSDEVNGLLERLEATFIKHFANSNRREGMDS LRPKAKREKHSVTFFSGFFSGCSIALLIAVVLRIQARKLMDKAEGASYMVNIFPLYSLFAFIVLHILIYSANIYFWRQYRVNYPFIFGFKQGTELGHRDV FLLGTGLAVLALSSFLANLHLDLGSKASNYKTITELVPLGLVTVVLAIIFCPFNIIYRSSRFFFVQCLFRCICAPLYKVRLADFFLADHVTSQVQAIRSI ELYICYYGLGEYSRRQNKCHSHGAYNAFYFVVAVVPFWLRLLQCLRRLCEEKDAVHGYNGLKYFLTIIAVLIRTAYELKKGRTWMVFALISSAVAVIVNT YWDIAVDWGLLRRKSKNAFLRDKLVISHKSVYFAAIIMNVVLRLAWMQLVIEFNLQSIHKMAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G090300 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.001G365300 [exp]	5.47	0.6780
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G161000 [exp]	13.63	0.6962	ERF64
AT3G15115			unknown protein		Potri.001G372800 [exp]	16.73	0.6372
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.001G365366 [exp]	62.25	0.5898
AT1G69050			unknown protein		Potri.010G138700 [exp]	67.64	0.5787
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Potri.018G071400 [exp]	80.93	0.5802	AKT1.2
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.001G286400 [exp]	101.58	0.5881
AT5G60800			Heavy metal transport/detoxifi...		Potri.004G214700 [exp]	107.40	0.5612
AT5G58360	OFP	ATOFP3, OFP3	ARABIDOPSIS THALIANA OVATE FAM...		Potri.004G003700 [exp]	108.74	0.5411
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	123.20	0.5757

Compare expression of checked genes

Potri.008G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.