Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RBCMT.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14030 630 / 0 Rubisco methyltransferase family protein (.1) AT3G07670 95 / 1e-20 Rubisco methyltransferase family protein (.1) AT3G55080 86 / 1e-17 SET domain-containing protein (.1.2) AT4G20130 64 / 1e-10 PTAC14 plastid transcriptionally active 14 (.1) AT2G18850 64 / 2e-10 SET domain-containing protein (.1.2) AT1G24610 58 / 7e-09 Rubisco methyltransferase family protein (.1) AT5G14260 51 / 1e-06 Rubisco methyltransferase family protein (.1.2.3) AT1G01920 47 / 3e-05 SET domain-containing protein (.1.2) AT3G56570 43 / 0.0004 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G047400 [exp] 96 / 3e-21 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.014G169300 [exp] 93 / 6e-20 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.006G168900 [exp] 59 / 5e-09 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.014G077700 [exp] 56 / 5e-08 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 55 / 8e-08 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.017G066500 [exp] 53 / 3e-07 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.004G081400 [exp] 53 / 3e-07 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.003G155100 [exp] 49 / 6e-06 AT4G20130 679 / 0.0 plastid transcriptionally active 14 (.1) Potri.004G135700 [exp] 46 / 6e-05 AT3G56570 446 / 9e-153 SET domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036780 [exp] 647 / 0 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10012309 [exp] 104 / 1e-23 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 91 / 2e-19 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 76 / 2e-14 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10006953 [exp] 71 / 7e-13 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 67 / 2e-11 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10016435 [exp] 63 / 2e-10 AT1G01920 680 / 0.0 SET domain-containing protein (.1.2) Lus10022333 [exp] 63 / 3e-10 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 61 / 2e-09 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10021783 [exp] 60 / 2e-09 AT1G24610 643 / 0.0 Rubisco methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.008G090500.2 pacid=42808842 polypeptide=Potri.008G090500.2.p locus=Potri.008G090500 ID=Potri.008G090500.2.v4.1 annot-version=v4.1 ATGGCCACACACTTCACTCTCTCACTCTCTCCTTCAAAACCCTTCAAAAACTCCACTTTCTTCACCAAGAACCCATCTCTTCATTTCAAGAAACCACTCT CTGTAACCTCTTTTCAGTCACCACCGGCAGCAGCTGCTGCAGCGGCAGTGCAAACATTCTGGCAGTGGCTGAGTGATCAAGATGTGGTGTCAGCCAAGAC TCCTGCAAGGCCTGGTTTGGTGCCTCAAGGCCTGGGGCTGGTAGCACAGAGAGATATTTCAAGAAATGAAGTTGTTTTGGAGATACCAAAGAAGCTGTGG ATAAACCCGGATGTAGTAGCTGCTTCTGAGATAGGGAATGTGTGCGGTGGAGTGAAGCCTTGGGTATCCGTGGCTCTTTTCTTGATAAGAGAGAAGTTAA AGGAGGATTCGACTTGGAGGCCATATTTGGATGTCCTTCCCGAAAGTACTAATTCCACTATATTTTGGTCAGAAGAGGAGCTTGCTGAACTTCAAGGAAC CCAGCTATTGAGCACAACATTGGGTGTGAAAAGCTATCTGCGGCGTGAATTTCTGAAAGTAGAAGAAGAAATCCTTGTCCCTCATAAGCAGCTCTTTCCC TCCCCTGTAACGTTGGATGACTTCTCTTGGGCATTTGGGATTCTCAGATCAAGGTCTTTTTCACGTCTTCGTGGTCAAAACCTTGTTTTGATCCCCCTGG CAGACTTGGTCAACCACAGCCCAGACATTACCATAGAAGATGGTGTTTATGAGATTAAAGGAGCAGGTCTTTTCTCCAGAGATCTCATATTTTCTTTGCG GTCCCCCATTTCACTCAAGGCCGGTGAGCAGGTACTTATCCAATATAATTTAAACTTGAGCAATGCTGAGTTGGCTGTGGACTATGGATTCATAGAAGCA AAGTCAGACCGCAATATGTATACCTTGACACTTCAGATATCTGAGTCAGACCCATTTTTCGGTGACAAGCTGGATATTGCCGAGACAAATGGTCTGGGTG AGATAGCAGATTTTGACATTGTTCTAGGCAATCCTCTTCCACCAACATTGCTTCCATATCTGAGGCTGGTAGCACTTGGGGGTACCGATTCTTTCCTCTT GGAATCTATTTTCAGAAACACTATATGGGGCCATCTCGAATTGCCAGTAAGCCGTGCCAATGAGGAGCTCATATGCAGAGTGGTCAGAGATGCTTGCAAA TCTGCTCTTTCTGGATATCATACCACCATTGAAGAGGATGAGAAGCTAAAAGGAGAAGAACTCAACCCAAGGCTTGAGATTGCAGTTGGAATAAGAGCAG GGGAAAAGAAGGTGCTGCAGCAAATTGAGGAGATTTTCAAGCAGAGACAATCAGAATTAGATGAGTTGGAATATTACCAGGAGAGGAGGCTCAAGGATCT TGGTCTAGTTGGGGAGCAAGGTGAAATCATATTTTGGGAGTCCAAGTAG
AA sequence Show only first row Show all	>Potri.008G090500.2 pacid=42808842 polypeptide=Potri.008G090500.2.p locus=Potri.008G090500 ID=Potri.008G090500.2.v4.1 annot-version=v4.1 MATHFTLSLSPSKPFKNSTFFTKNPSLHFKKPLSVTSFQSPPAAAAAAAVQTFWQWLSDQDVVSAKTPARPGLVPQGLGLVAQRDISRNEVVLEIPKKLW INPDVVAASEIGNVCGGVKPWVSVALFLIREKLKEDSTWRPYLDVLPESTNSTIFWSEEELAELQGTQLLSTTLGVKSYLRREFLKVEEEILVPHKQLFP SPVTLDDFSWAFGILRSRSFSRLRGQNLVLIPLADLVNHSPDITIEDGVYEIKGAGLFSRDLIFSLRSPISLKAGEQVLIQYNLNLSNAELAVDYGFIEA KSDRNMYTLTLQISESDPFFGDKLDIAETNGLGEIADFDIVLGNPLPPTLLPYLRLVALGGTDSFLLESIFRNTIWGHLELPVSRANEELICRVVRDACK SALSGYHTTIEEDEKLKGEELNPRLEIAVGIRAGEKKVLQQIEEIFKQRQSELDELEYYQERRLKDLGLVGEQGEIIFWESK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	0	1	RBCMT.1
AT2G23560		ATMES7	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G036800 [exp]	1.41	0.9847
AT4G38160		PDE191	pigment defective 191, Mitocho...		Potri.004G209400 [exp]	2.00	0.9708
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	3.16	0.9801	RNP1.2
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	7.14	0.9634
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.002G146200 [exp]	7.61	0.9525	PAG1.4
AT3G04310			unknown protein		Potri.010G063300 [exp]	7.93	0.9610
AT4G22720			Actin-like ATPase superfamily ...		Potri.017G029200 [exp]	8.36	0.9500
AT3G58140			phenylalanyl-tRNA synthetase c...		Potri.013G105200 [exp]	8.94	0.9700
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	9.00	0.9720
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	10.48	0.9649

Compare expression of checked genes

Potri.008G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.