Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14020 776 / 0 O-fucosyltransferase family protein (.1) AT2G03280 719 / 0 O-fucosyltransferase family protein (.1.2) AT5G15740 585 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 575 / 0 O-fucosyltransferase family protein (.1) AT2G37980 400 / 3e-133 O-fucosyltransferase family protein (.1) AT3G54100 394 / 5e-131 O-fucosyltransferase family protein (.1) AT5G35570 394 / 9e-131 O-fucosyltransferase family protein (.1) AT1G22460 385 / 1e-128 O-fucosyltransferase family protein (.1) AT5G64600 375 / 2e-125 O-fucosyltransferase family protein (.1) AT5G01100 376 / 3e-124 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164700 [exp] 914 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 616 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 601 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 589 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 579 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 416 / 1e-138 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 405 / 1e-136 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 404 / 6e-135 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 384 / 1e-128 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037144 [exp] 798 / 0 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10036785 [exp] 795 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 788 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 785 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 598 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 595 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 595 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 595 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 526 / 0 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 519 / 0 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G090600.1 pacid=42807689 polypeptide=Potri.008G090600.1.p locus=Potri.008G090600 ID=Potri.008G090600.1.v4.1 annot-version=v4.1 ATGGAGGTTGTTAGATCTGAGAGTGGAGTAAGGAGCGAGAAAATAGCAGCGCCGGTGGCTCCAGTCATTGCTAGAACTAAGCGATTACAAGTTTGGTTTA TCAGGGTTTGTTCCAGTATTCTTTTATGGACCTGTTTGGTTCAGCTTCTTACGGTTGGAGAGTTATGGCACTCCAGTTTTATCAATATCATCGCCCCCTC CGTTAAACATCCTCCTCTTCCCCTCCTTCCCCTTAGAAACTATACAAGCAATGGTTATCTTAAAGTGTCCTGCAATGGTGGCTTGAATCAAATGCGATCC GCGATCTGTGACATGGTGGCTGTCGCCAGGCTTTTGAATCTCACTTTGGTTGTTCCAGAACTTGATAAAACATCTTTCTGGGCTGACAATAGTACTTTTG AGGACATATTTGATGTGAAACATTTCATTGAGTCACTAAGAGATGAAATTCGAATTGTCAGAAGGCTTCCAAAGAGATTTAGTAGTAAATATGGATACAA AGTATTTGAGATGCCCCCGGTTAGCTGGTCCAGCGAAGAATACTACCTGCAACAGATCTTGCCACTTTTCAGTAAACAAAAGGTGTTGCACTTCAATAAA ACAGATGCACGTTTGGCAAACAACGGGGTTTCAATTGATCTTCAGAAAGTCAGGTGCCGTGTTACTTTTCAGGCACTGAAATTCACTCCAGAGATTGAAT CTTTGGGGTACAAATTGGTTCGTGTTCTACACGAAAGGGGGCCTTTTGTGGCTTTGCATATGAGATATGAGATGGACATGTTGGCTTTCTCAGGTTGTAC CCATGGCTGTACCAAGGAAGAAGCCGAGGAGCTCAAGCAGTTAAGGTATGCATACCCTTGGTGGAGAGAGAAAGAGATAGTTTCTGAAGAGAGGAGATCA CAAGGTTTGTGCCCATTGACTCCTGAGGAGACAGCGTTGATTTTGCAAGCACTGGGTTTTGACAAGGACACACAGATATATATTGCAGCTGGTGAGATAT ATGGCAGTGAGCGGAGACTTGCGGTGCTAAGAGCTGCTTATCCAAGGACTGTGAGAAAGGAAATGCTATTAGATTCAGGGGAGCTGCAGCAATTCCAGAA CCATTCATCACAAATGGCTGCACTCGATTTCATGGTCTCAATAGCCAGTGACACTTTCATCCCCACCTATGACGGAAACATGGCAAAAGTTGTGGAAGGT CACCGCAGGTATCTTGGGTTTAAGAAGACTGTCCTGCTAGACCGAAAAAGACTTGTGGAGTTAATGGATTTGCATCAGATTGGGACACTTACATGGAATG AGTTTGTATTTGCTGTTCGATCAGCACATGAGAAGAGGATGGGAAAGCCAACTCGACGTAGGGTTATTGCAGATAAACCAAAAGAGGAAGATTATTTTTA CGCAAACCCTCAAGAGTGCCTTTGTGAGGGAACAAGCTGTGATGATTTATTAGGACCTGGTAATTCAAGTTCAGTTCCGTGA
AA sequence Show only first row Show all	>Potri.008G090600.1 pacid=42807689 polypeptide=Potri.008G090600.1.p locus=Potri.008G090600 ID=Potri.008G090600.1.v4.1 annot-version=v4.1 MEVVRSESGVRSEKIAAPVAPVIARTKRLQVWFIRVCSSILLWTCLVQLLTVGELWHSSFINIIAPSVKHPPLPLLPLRNYTSNGYLKVSCNGGLNQMRS AICDMVAVARLLNLTLVVPELDKTSFWADNSTFEDIFDVKHFIESLRDEIRIVRRLPKRFSSKYGYKVFEMPPVSWSSEEYYLQQILPLFSKQKVLHFNK TDARLANNGVSIDLQKVRCRVTFQALKFTPEIESLGYKLVRVLHERGPFVALHMRYEMDMLAFSGCTHGCTKEEAEELKQLRYAYPWWREKEIVSEERRS QGLCPLTPEETALILQALGFDKDTQIYIAAGEIYGSERRLAVLRAAYPRTVRKEMLLDSGELQQFQNHSSQMAALDFMVSIASDTFIPTYDGNMAKVVEG HRRYLGFKKTVLLDRKRLVELMDLHQIGTLTWNEFVFAVRSAHEKRMGKPTRRRVIADKPKEEDYFYANPQECLCEGTSCDDLLGPGNSSSVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	0	1
AT2G30050			transducin family protein / WD...		Potri.008G141300 [exp]	3.16	0.9523
AT3G22290			Endoplasmic reticulum vesicle ...		Potri.006G023900 [exp]	4.35	0.9380
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.003G085200 [exp]	4.89	0.9514	Pt-NPSN11.1
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	5.00	0.9531
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Potri.011G090900 [exp]	5.19	0.9453
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Potri.006G004500 [exp]	6.00	0.9300
AT4G33945			ARM repeat superfamily protein...		Potri.004G144100 [exp]	6.63	0.9506
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	6.78	0.9273	Pt-DET3.1
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.004G157700 [exp]	7.07	0.9497
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	8.83	0.9485

Compare expression of checked genes

Potri.008G090600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.