Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14000 743 / 0 VIK VH1-interacting kinase (.1) AT3G58760 308 / 1e-100 Integrin-linked protein kinase family (.1) AT4G18950 294 / 2e-95 Integrin-linked protein kinase family (.1) AT2G31800 259 / 1e-81 Integrin-linked protein kinase family (.1) AT2G43850 253 / 3e-79 Integrin-linked protein kinase family (.1.2) AT3G59830 244 / 1e-75 Integrin-linked protein kinase family (.1) AT4G38470 188 / 1e-53 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 185 / 1e-52 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 184 / 2e-52 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT4G31170 180 / 5e-52 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164500 [exp] 817 / 0 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.004G064400 [exp] 304 / 2e-99 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 288 / 2e-93 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.017G007800 [exp] 253 / 3e-79 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.007G142100 [exp] 253 / 5e-79 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2) Potri.004G179457 [exp] 193 / 8e-57 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 192 / 5e-56 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 192 / 2e-55 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 191 / 1e-54 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030435 [exp] 768 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 764 / 0 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10029277 [exp] 295 / 3e-95 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 289 / 8e-94 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 276 / 2e-88 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10008350 [exp] 223 / 2e-66 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 212 / 3e-62 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10012517 [exp] 193 / 3e-55 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 189 / 2e-54 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 186 / 8e-53 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.008G090800.1 pacid=42808496 polypeptide=Potri.008G090800.1.p locus=Potri.008G090800 ID=Potri.008G090800.1.v4.1 annot-version=v4.1 ATGAGCTCCGAGACTCCATCCTCCGTTGCCGACACTTCCACGGCTGGAATTTCTTCTTCATCTTCGACGGCAGGCAAGCAGAAGGAGAAGGCGAGAGTGA GCAGGACGTCTTTGATACTGTGGCACGCCCATCAAAACGACGCCGCTGCCGTCCGGAAGCTTCTAGAGGAAGATCCATCTCTCGTTAGTGCTAGGGATTA CGATAAACGGACTCCTCTCCACGTGGCATCTCTCCATGGATGGATCGATGTCGCTAAGTGCTTGATTGAGTTTGGCGCCGATGTCAACGCCCAAGATCGC TGGAAAAACACGCCATTAGCTGATGCAGAAGGAGCTAAAAAGCACAGCATGATTGAACTTTTAAAATCATACGGTGGCTTGTCATATGGACAAAATGGAA GCCATTTTGAACCAAAGCCTGTTCCACCCCCTCAACCAAATAAGTGTGACTGGGAAATTGAACCTTCTGAGCTGGACTTCTCTAACTCAAACATTATTGG AAAGGGATCTTTTGGTGAGATTTTGAAAGCATCTTGGCGTGGAACACCGGTAGCTGTTAAACGCATTCTTCCATCCCTCTCAGACGATAGATTGGTGATT CAGGACTTCAGGCATGAGGTTAATTTGCTAGTCAAGCTTCGTCATCCTAATATAGTCCAATTTTTGGGAGCAGTCACTGAGAGGAAGCCTCTTATGTTAA TTACTGAATATCTGCGAGGGGGTGATCTTCATCAGTACCTCAAGGAAAAGGGCGCGCTAAGTCCATCAACAGCCATAAACTTTGCGCTGGACATTGCCAG AGGCATGGCATGTCTTCACAATGAACCAAATGTCATTGTTCACAGAGACCTAAAACCAAGGAATGTTCTTTTAGTCAACTCCAATGCAGACCATTTGAAA GTTGGAGATTTTGGTCTAAGCAAGCTCATCAAGGTTCAAAACTCTCATGATGTGTACAAAATGACTGGCGAGACAGGAAGTTACCGGTATATGGCTCCTG AAGTTTTCAAGCACCGGAAATACGATAAAAAAGTAGATGTTTTCTCCTTCGCAATGATACTATACGAGATGCTTGAAGGGGAACCGCCTTTTTCGAATTT TGAGCCTTATGAAGCAGCCAAGTACGTGGCAGAAGGGCATAGACCGACATTTCGTTCCAAAGGATTCAATGTCTTTGAACTCAGAGAATTGACAGATCAG TGTTGGGCCGCTGACATGAATAGAAGACCTACTTTCTTGGAAATTCTTAAGAGACTTGAAAAGATCAAGGAAAACTTGCCGACAGATCATCACTGGCATA TATTCAATCCATGA
AA sequence Show only first row Show all	>Potri.008G090800.1 pacid=42808496 polypeptide=Potri.008G090800.1.p locus=Potri.008G090800 ID=Potri.008G090800.1.v4.1 annot-version=v4.1 MSSETPSSVADTSTAGISSSSSTAGKQKEKARVSRTSLILWHAHQNDAAAVRKLLEEDPSLVSARDYDKRTPLHVASLHGWIDVAKCLIEFGADVNAQDR WKNTPLADAEGAKKHSMIELLKSYGGLSYGQNGSHFEPKPVPPPQPNKCDWEIEPSELDFSNSNIIGKGSFGEILKASWRGTPVAVKRILPSLSDDRLVI QDFRHEVNLLVKLRHPNIVQFLGAVTERKPLMLITEYLRGGDLHQYLKEKGALSPSTAINFALDIARGMACLHNEPNVIVHRDLKPRNVLLVNSNADHLK VGDFGLSKLIKVQNSHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPFSNFEPYEAAKYVAEGHRPTFRSKGFNVFELRELTDQ CWAADMNRRPTFLEILKRLEKIKENLPTDHHWHIFNP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	0	1
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	1.73	0.7203
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.010G194300 [exp]	5.47	0.6256	Pt-SYP81.2
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	7.48	0.6390
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	11.31	0.6224
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	11.31	0.5975
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Potri.007G080100 [exp]	13.00	0.5663
AT1G15860			Domain of unknown function (DU...		Potri.003G180300 [exp]	15.58	0.5872
					Potri.001G394701 [exp]	18.43	0.5591
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G104100 [exp]	18.89	0.6034
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	24.28	0.6075	EMB78.2

Compare expression of checked genes

Potri.008G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.