Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VTI12.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26670 327 / 7e-115 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT5G39510 269 / 4e-92 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT3G29100 209 / 6e-69 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 145 / 2e-43 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164300 [exp] 395 / 9e-142 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.004G115700 [exp] 290 / 3e-100 AT5G39510 325 / 5e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.017G087700 [exp] 290 / 4e-100 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037141 [exp] 331 / 3e-116 AT1G26670 324 / 1e-113 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10021624 [exp] 281 / 1e-96 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10034696 [exp] 280 / 7e-95 AT5G39510 318 / 5e-110 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10036788 [exp] 276 / 3e-94 AT1G26670 243 / 3e-81 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10026134 [exp] 248 / 1e-84 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 166 / 3e-51 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 99 / 1e-23 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [poplar] [flax] Traffic PF05008 [poplar] [flax] V-SNARE Vesicle transport v-SNARE protein N-terminus CL0147 [poplar] [flax] Traffic PF12352 [poplar] [flax] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Potri.008G091000.7 pacid=42807339 polypeptide=Potri.008G091000.7.p locus=Potri.008G091000 ID=Potri.008G091000.7.v4.1 annot-version=v4.1 ATGAGTGAAGTCTTCGAAGGATACGAGCGTCAGTACTGCGAGCTCTCTGCCAATCTCTCTCGAAAATGCAACTCTACTTCTCTTCTTCCCGATGGAGTGG AAAAGAACGCGAAGGTCAATGAGATTAAATCTGGTCTGGATGATTGTGATGTTCTGATTAGGAAAATGGACCTTGAAGCTAGGAGTTTGCAGCCGAGTGT GAAGGCTATGTTTCTGGCCAAGTTGAGGGAATATAAGTCTGATCTGAATAAGTTGAAGAGGGAATTTAAAAGGATAACGTCCGGTGATGTTAGTCAGGCT TCCCGTGAAGAGTTGTTGGAGGCTGGAATGGCTGATGCGCATTCGGTTTCTACTGATCAAAGAGAAAGATTGACTATGTCAGTAGAGAGATTAAATCAGT CCAGCGATAGAATTAAGGAGAGCAGAAGAGCCATGCTAGAGACAGAAGAGCTTGGTGTCTCAGTTCTTGAAGATTTGCATCAACAGCGCCAGACGCTCCT GCATGCTCATAACAAGCTTCATGGAGTAGATGATGCTATTGACAAGAGTAAGAAAGTCCTATCTTCCATGTCAAGAAGAATGACCAGAAACAAGTGGATC GTTGGCTCAGTAATTGCTGCTCTTGTTGTAGCAATCATTTTTATCATCTTATTTAAGACTTCTTATCATTAA
AA sequence Show only first row Show all	>Potri.008G091000.7 pacid=42807339 polypeptide=Potri.008G091000.7.p locus=Potri.008G091000 ID=Potri.008G091000.7.v4.1 annot-version=v4.1 MSEVFEGYERQYCELSANLSRKCNSTSLLPDGVEKNAKVNEIKSGLDDCDVLIRKMDLEARSLQPSVKAMFLAKLREYKSDLNKLKREFKRITSGDVSQA SREELLEAGMADAHSVSTDQRERLTMSVERLNQSSDRIKESRRAMLETEELGVSVLEDLHQQRQTLLHAHNKLHGVDDAIDKSKKVLSSMSRRMTRNKWI VGSVIAALVVAIIFIILFKTSYH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.008G091000 [exp]	0	1	Pt-VTI12.1
AT1G16560			Per1-like family protein (.1.2...		Potri.012G134300 [exp]	4.00	0.7663
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.016G094300 [exp]	16.91	0.6392
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	19.89	0.7502
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.009G021200 [exp]	20.34	0.7593
AT2G40600			appr-1-p processing enzyme fam...		Potri.013G092700 [exp]	27.94	0.7185
AT5G20700			Protein of unknown function (D...		Potri.006G078300 [exp]	30.06	0.7225
AT5G01650			Tautomerase/MIF superfamily pr...		Potri.016G126600 [exp]	32.58	0.7232
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.006G249300 [exp]	44.39	0.7065	HTA907
AT4G25180			RNA polymerase III RPC4 (.1)		Potri.003G107300 [exp]	47.01	0.7167
AT4G02980		ABP1	endoplasmic reticulum auxin bi...		Potri.002G212400 [exp]	55.41	0.6970

Compare expression of checked genes

Potri.008G091000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.