Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69450 873 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 784 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 539 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 521 / 1e-175 Early-responsive to dehydration stress protein (ERD4) (.1) AT1G11960 395 / 5e-127 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 388 / 1e-123 early-responsive to dehydration stress protein (ERD4) (.1) AT3G54510 384 / 3e-123 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G02900 385 / 8e-123 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 382 / 3e-122 ERD (early-responsive to dehydration stress) family protein (.1) AT4G15430 374 / 7e-119 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164100 [exp] 1188 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 870 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 559 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 415 / 3e-135 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 384 / 5e-122 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 378 / 2e-120 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.003G099800 [exp] 372 / 9e-118 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.014G156100 [exp] 370 / 2e-117 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006000 [exp] 369 / 9e-117 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037139 [exp] 981 / 0 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 964 / 0 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 813 / 0 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10004550 [exp] 538 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004597 [exp] 535 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 493 / 2e-165 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10036791 [exp] 444 / 7e-147 AT1G69450 426 / 7e-140 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10035300 [exp] 390 / 4e-125 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10002133 [exp] 389 / 5e-124 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10043455 [exp] 385 / 2e-123 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.008G091200.7 pacid=42807634 polypeptide=Potri.008G091200.7.p locus=Potri.008G091200 ID=Potri.008G091200.7.v4.1 annot-version=v4.1 ATGCTCGTTTCCGCTATTCTAACATCAGTGGGGATAAACTCTGCTCTATGTGTTCTATTCGTTGTACTGTACTCTATACTGAAGAAACAACCAAGTTATT ATGAAGTTTATATACCGCGCTTGCTGACGGAAGGGAATTCTAAACGGAGAAGCCGTTTCAACCTTGAAAGGCTAATACCATCTACTGGCTGGTTGCCCAA GGCATGGAAACTATCGGAAGAGGAAATGTTGTCTTCTTCAGGCTTGGACGCCGTGGTGTATATGCGAACTATAACTTTCTGTTTGAAAGTATTTTCATTC GCTGGGATAATAGGGATATTTATTCTTCTTCCAGTGAACTGTTCGGGGACTGAGCTTCACCAAATTGACTTCGAAGATTTGTATAGTAATTCTCTGGATG TATTCACCATTTCAAATGTAAATCGAGGCTCAAAGTGGTTATGGATTCACTTCTCTTCTGTATATGCTATCACTATTTTCATCTGCTATCTACTTTATCA TGAATATAACTATATTTCTTCAAAAAGGATTGCGTATTTTTATTCATCCAAACCTCAGCCACATCAGTTCACCATCTTAGTTCGCAATATCCCTGTCTCA GCTGGAAGCAGTGTCAGTGACAGTGTCGAGAGGTTCTTTACCGAGTATTACCCTACCACATATCTGTCACATATAGTTGTTCGCCGAACTAGCAAAGTTC AGAGCCTCATTAATGATGCAAAGCAATTATACAGGAGGCTTCTTCACTTGCAATCAGAACCATCTGAGCAGAAGTATAAGCAAGTTGGATTGTTTGAAAA AAAGGATGATCTTTTGGATCATTATGGGAAGAGGTTAGAAGACTTAGAGCAGAATGCGAGATTGGAGCAATCTGAGGTATCATTGGCAAAAGACACTCAT GCTGCCTTTGTGTCCTTCAAGACTCGGTATGGTGCTTCCACTGTTTTCCACCTGCAACAATCAACCAACCCCACACATTGGCTCACAGAAGAAGCTCCTC AACCAAATGACGTCTTTTGGCCTTTTTTTTCTTCATCATTCATGGGAAGATGGATTTCTAAGCTTTTGGTTGTAGTTGCGTGTATTCTTCTTACAATTTT GTTCCTTATTCCTGTTGTAGTTGTACAAGGTCTTACTAACCTGAGTCAGCTGGAAGTTTGGTTTCCATTCCTCAAAAGCATTCTAACCTTAGCATTTGTC AGTCAAATAGTTACAGGATATCTTCCTAGTCTGATTCTTATGTTGTTCCTAAAGATCGTGCCCCCAATCATGGAGTTCCTCTCCTCCATTCAAGGATACA TTTCTCATAGCGAGATAGAGAGGAGTGCATGCAACAAAGTACTCTGGTTCACAGTATGGAACATCTTCTTCGCCACTGTATTTTCCGGTTCCGTGTTAAA TCAGATTTCCATTGCTCTTGATCCCAAGAATATTCCTACAAAACTGGCTGTTGTTGTTCCAGCACAGGCATCATTTTTCATTGCTTATGTTGTCACATCT GGATGGACAAGCACTTCATCGGAACTTTTTCGCATAATCCCTCTAATTTGCAGTCTAATGACGAAGTGTTGTGCTGAAAGTACAGATGATGAAATTGAAG TTCCATCTATTCCTTATCACAGGGACATTCCCAGGATTCTTTTCTTTGGACTTCTTGGTATTGCATATTTCTTCTTAGCTCCCGTCATTCTGCCCTTCCT TCTGGTGTACTTCTGTCTTGCATACATCATCTTCCGTAACCAGTTCATAAATGTATATGCTCCCAAGCACGAAACTGCAGGGAAGTTTTGGCCTATCGTA CACAATTTGGTGATATTTTCTCTGGTACTCATGCATGCGATTGCAGTGGGAATCTTTTCTCTGAAGAAGCTCTCTCTCGCATCAACCTTAGTCTTACCTC TTCCAGTTCTCACGCTTCTGTTTAATGAGTACTGCAGGAAACGCTTCCTCCCCATTTTTACAGCTTATCCAGCTGAGATATTGATAAAGAAGGACAGGGA AGATCAAAATGATGCTACGATGTCTGAATTTTTTGATAAATTGGCCACCACCTATCAGGACCCGGCTCTAATGCCGATTCAGTACTCTGCAGACAGTGAA AGTCTTAACAGACCGCTTATACCATCTGCTGAAATGTCAATGTGA
AA sequence Show only first row Show all	>Potri.008G091200.7 pacid=42807634 polypeptide=Potri.008G091200.7.p locus=Potri.008G091200 ID=Potri.008G091200.7.v4.1 annot-version=v4.1 MLVSAILTSVGINSALCVLFVVLYSILKKQPSYYEVYIPRLLTEGNSKRRSRFNLERLIPSTGWLPKAWKLSEEEMLSSSGLDAVVYMRTITFCLKVFSF AGIIGIFILLPVNCSGTELHQIDFEDLYSNSLDVFTISNVNRGSKWLWIHFSSVYAITIFICYLLYHEYNYISSKRIAYFYSSKPQPHQFTILVRNIPVS AGSSVSDSVERFFTEYYPTTYLSHIVVRRTSKVQSLINDAKQLYRRLLHLQSEPSEQKYKQVGLFEKKDDLLDHYGKRLEDLEQNARLEQSEVSLAKDTH AAFVSFKTRYGASTVFHLQQSTNPTHWLTEEAPQPNDVFWPFFSSSFMGRWISKLLVVVACILLTILFLIPVVVVQGLTNLSQLEVWFPFLKSILTLAFV SQIVTGYLPSLILMLFLKIVPPIMEFLSSIQGYISHSEIERSACNKVLWFTVWNIFFATVFSGSVLNQISIALDPKNIPTKLAVVVPAQASFFIAYVVTS GWTSTSSELFRIIPLICSLMTKCCAESTDDEIEVPSIPYHRDIPRILFFGLLGIAYFFLAPVILPFLLVYFCLAYIIFRNQFINVYAPKHETAGKFWPIV HNLVIFSLVLMHAIAVGIFSLKKLSLASTLVLPLPVLTLLFNEYCRKRFLPIFTAYPAEILIKKDREDQNDATMSEFFDKLATTYQDPALMPIQYSADSE SLNRPLIPSAEMSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69450			Early-responsive to dehydratio...		Potri.008G091200 [exp]	0	1
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128900 [exp]	2.82	0.7210
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.002G067100 [exp]	22.11	0.7047
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Potri.014G120100 [exp]	28.12	0.6742	SDG913,EMB173.1
					Potri.003G196200 [exp]	28.49	0.6606
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284600 [exp]	29.39	0.6571
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	33.94	0.6420
AT5G45030			Trypsin family protein (.1.2)		Potri.015G121400 [exp]	41.59	0.6642
AT1G77310			unknown protein		Potri.002G078800 [exp]	43.45	0.6668
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035701 [exp]	51.02	0.6365
AT3G22550			Protein of unknown function (D...		Potri.005G211500 [exp]	60.79	0.6234

Compare expression of checked genes

Potri.008G091200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.