Plant FIBer expression Database

Potri.008G091500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26650 401 / 3e-140 unknown protein
AT1G69430 395 / 2e-137 unknown protein
AT4G19950 66 / 8e-12 unknown protein
AT1G31130 60 / 7e-10 unknown protein
AT5G44860 53 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G163400
[exp]
587 / 0 AT1G26650 453 / 1e-160 unknown protein
Potri.006G155900
[exp]
89 / 4e-20 AT1G69430 79 / 2e-16 unknown protein
Potri.006G159000
[exp]
89 / 5e-20 AT1G69430 78 / 4e-16 unknown protein
Potri.007G105700
[exp]
84 / 7e-18 AT4G19950 182 / 4e-55 unknown protein
Potri.007G105600
[exp]
83 / 9e-18 AT4G19950 179 / 7e-54 unknown protein
Potri.015G125600
[exp]
78 / 6e-16 AT1G31130 327 / 7e-112 unknown protein
Potri.005G186200
[exp]
73 / 3e-14 AT4G19950 185 / 3e-56 unknown protein
Potri.012G125800
[exp]
67 / 3e-12 AT5G44860 396 / 4e-139 unknown protein
Potri.015G060900
[exp]
60 / 9e-10 AT5G61340 164 / 5e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036796
[exp]
450 / 6e-159 AT1G69430 434 / 4e-153 unknown protein
Lus10037135
[exp]
447 / 8e-158 AT1G69430 431 / 8e-152 unknown protein
Lus10018322
[exp]
54 / 1e-07 AT4G19950 417 / 3e-147 unknown protein
Lus10036220
[exp]
51 / 3e-07 AT5G44860 265 / 3e-89 unknown protein
Lus10017130
[exp]
44 / 0.0001 AT4G19950 410 / 1e-144 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G091500.1 pacid=42808659 polypeptide=Potri.008G091500.1.p locus=Potri.008G091500 ID=Potri.008G091500.1.v4.1 annot-version=v4.1
ATGGAGGTTTCTAGCGGAGCTTCTCCTAGAATGAGTTTGGATCAGCTGCAAAAGGAGGGATCTGAAGAAACCCATCTCCAAAATTTTGAGCTTGATTCAT
TTGATTATAATGATAGCCATAATCTTCAGTTCTATTCAACGAGTGCATTGGATATCTTGAGAGAAACAGCGAGGATTCTCCGATGTAATTCATGGTCGTT
TATGACAATTGCTGCTTTGCTTATTTGTCCAGTATCTGCCATTCTTTTGTCGAATGTATTGGTTGATCAGTCTATTGTTAAGAGATTGAGTACTAGGCTT
TTGTTAGTTGCAAATTCTAGTGGACTTCCATTGAGGCCTCTTATCAAACAGCTGTGTCATCGTTTTGCCGAGATGGCTGTTTCGTCTGCAACGTGTTTCC
CGTTGTTTATTACCTTGTCTTTGTTATCAAGAGCTGCGGTGGTTTATTCTGTAGATTGCACATATTCGAGGAAAGATGTTGATGGTTCAAAGTTTTTGGC
AATGATAAGTAAAATTTGGAGGAGGATTGTTTCGACGTATTTGTGGTCGTGTATGGTGATTGTCGGTTGTCTCACGTTATTCTTTGTTCTTCTTTTAGCT
GTTTGTAGCACATTTTTGGTGCTTGGGTTTTGGCCGGAGTTAAATCTGTATGCTGCGATGATAGTGGGGCTAGTTTTCTCGGTTATTTTTGCCAACGCGA
TTATTGTTTGCAATATTGCTGTTGTGATCTCTGTGTTGGTGGATGTTTCAGGGCCGCAGGCATTGCTCCGGTCCAGTGTTTTAATTAGGGGACAGACTCA
GGTGGGTCTTTTAATATTTCTTGGATCAACAATTGGGATGGCATTTATAGAAGGTTTGTTTGAGCATAGAGTTAAGACATTGAGTTATGGAGATGGGTCT
TCCAGGATCTGGGAAGGTCCTCTCTTGGTTATTATGTATTCATTTGTGGTGCTTATTGATTTGATGATGAGTGCAGTTTTCTACTATAGTTGTAGATCTC
ATGGCATGGAAGCCTCGGATGGCGAATGCCTGGCAATTTTAGGAACAGTTACTGTTTCTGCCGAATCTGTGGGCATTCCATGA
AA sequence
>Potri.008G091500.1 pacid=42808659 polypeptide=Potri.008G091500.1.p locus=Potri.008G091500 ID=Potri.008G091500.1.v4.1 annot-version=v4.1
MEVSSGASPRMSLDQLQKEGSEETHLQNFELDSFDYNDSHNLQFYSTSALDILRETARILRCNSWSFMTIAALLICPVSAILLSNVLVDQSIVKRLSTRL
LLVANSSGLPLRPLIKQLCHRFAEMAVSSATCFPLFITLSLLSRAAVVYSVDCTYSRKDVDGSKFLAMISKIWRRIVSTYLWSCMVIVGCLTLFFVLLLA
VCSTFLVLGFWPELNLYAAMIVGLVFSVIFANAIIVCNIAVVISVLVDVSGPQALLRSSVLIRGQTQVGLLIFLGSTIGMAFIEGLFEHRVKTLSYGDGS
SRIWEGPLLVIMYSFVVLIDLMMSAVFYYSCRSHGMEASDGECLAILGTVTVSAESVGIP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G26650 unknown protein Potri.008G091500
[exp]
0 1
AT3G07180 GPI transamidase component PIG... Potri.002G245000
[exp]
3.46 0.8616
AT1G79220 Mitochondrial transcription te... Potri.007G069100
[exp]
4.69 0.8557
AT2G03820 nonsense-mediated mRNA decay N... Potri.017G137500
[exp]
5.47 0.8286
Potri.001G215166
[exp]
8.12 0.8067
AT5G07900 Mitochondrial transcription te... Potri.001G034500
[exp]
12.00 0.8447
AT5G03800 EMB166, EMB175,... embryo defective 1899, EMBRYO ... Potri.016G096400
[exp]
15.81 0.8151
AT5G23340 RNI-like superfamily protein (... Potri.007G075600
[exp]
16.97 0.8270
Potri.011G062950
[exp]
22.64 0.8164
Potri.004G111050
[exp]
24.00 0.8044
AT1G19370 unknown protein Potri.014G180900
[exp]
27.71 0.7747

Potri.008G091500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.