Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11810 235 / 3e-75 unknown protein AT2G03330 112 / 5e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163300 [exp] 399 / 6e-140 AT3G11810 234 / 1e-74 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036797 [exp] 142 / 8e-40 AT3G11810 212 / 2e-66 unknown protein Lus10037134 [exp] 100 / 6e-25 AT3G11810 159 / 1e-47 unknown protein Lus10030427 [exp] 74 / 8e-15 AT3G11810 114 / 3e-29 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G091600.1 pacid=42807462 polypeptide=Potri.008G091600.1.p locus=Potri.008G091600 ID=Potri.008G091600.1.v4.1 annot-version=v4.1 ATGGGATCAGCAGCAAACCTTTGCTCTGTGTTATCAGAATCACAACGTATAATAAACGCTCACTCCCGCCATTTCTTGGCTCTCTCTGTCCTCTTTATCC TCCCTCTTTCTTTCTTTCTTTCTGTCTACCCCGCCATCCAAAACATCATCTCTCAATTCTCCACTCGGGGCTCCAAAACCCTCCTCTCTCGTACATCTTA TCAAGATGACCCATCAAATCTTTTCACTACAAATTCCATTATCCTCTCTCTTCTCGTTTCACTCTTTACCATCACTTTCTCAACTTTTGCTCTAGGTTCC ATCACCTACAGTGTTATTCATGGATTCTACGGTAGACCTGTAAAGCTTTGGTCTTCAATCAAATCTGCTTTCACTTCTTTCTTTCCCCTTTTGATCACTG GCTCTTTTGTTGAAATTATCTTTTTGGGGGTCCTTCTCCCTTTTGTGTTGTTGTTGTTTTTTGTTATAAATGGAATTCAGCTTCCTGGATTTGAAATCAA TGTCTCTTCGCCTTATTTTATTGTTTTTCTTGTGATTCTTGGTGTTGTTCTGGTCTTCGTATTGCTTCATTTGCAATTGAAGTGGATTTTAGCTCAGGTG ATTGTGGTTGCCGAATCAAGTTGGGGTCTTGAGCCGTTGAGAAGGAGTGACTACTTAATGAAACGAATGAAGGGAGTGGCTTTGTCTATGGTTTTATTTT TTGGGTTTTTCTCTGGCTTGTTGGTAATTGCCAGTTCATTTCCTTGGGAAGGTTTGCATGTTGGTAATATTGATAGTGCATGGAAGATTTGGCCTTTTGT TGTTCGAATTGTGGTGACTTCAGCACTCCAAATGGTGTTGCAGCTTTACAATATCGCGGCGTTTGCTGTTCTTTACATGGATTGCAAGGCTGTGCACGGA GAGCTTGTTTTGGAGATTGCTGAGGAGTTTGCTGGTGACTATGTTAGCTTGCCTTTTGATGATGGAAAGACCCCTCATTTTGTTTCTGTTGCTTATATAT GA
AA sequence Show only first row Show all	>Potri.008G091600.1 pacid=42807462 polypeptide=Potri.008G091600.1.p locus=Potri.008G091600 ID=Potri.008G091600.1.v4.1 annot-version=v4.1 MGSAANLCSVLSESQRIINAHSRHFLALSVLFILPLSFFLSVYPAIQNIISQFSTRGSKTLLSRTSYQDDPSNLFTTNSIILSLLVSLFTITFSTFALGS ITYSVIHGFYGRPVKLWSSIKSAFTSFFPLLITGSFVEIIFLGVLLPFVLLLFFVINGIQLPGFEINVSSPYFIVFLVILGVVLVFVLLHLQLKWILAQV IVVAESSWGLEPLRRSDYLMKRMKGVALSMVLFFGFFSGLLVIASSFPWEGLHVGNIDSAWKIWPFVVRIVVTSALQMVLQLYNIAAFAVLYMDCKAVHG ELVLEIAEEFAGDYVSLPFDDGKTPHFVSVAYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11810			unknown protein		Potri.008G091600 [exp]	0	1
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.013G107500 [exp]	1.00	0.9049
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	3.16	0.8814
AT1G08610			Pentatricopeptide repeat (PPR)...		Potri.019G019200 [exp]	3.46	0.8951
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	5.19	0.8843
AT2G20410			RNA-binding ASCH domain protei...		Potri.019G017900 [exp]	7.28	0.8198
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	8.06	0.8483
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	9.94	0.8557
AT5G13970			unknown protein		Potri.002G238100 [exp]	12.72	0.8615
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	14.14	0.8273
AT5G13240			transcription regulators (.1)		Potri.010G115800 [exp]	16.61	0.8354

Compare expression of checked genes

Potri.008G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.