Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69420 627 / 0 DHHC-type zinc finger family protein (.1.2) AT4G15080 268 / 2e-80 DHHC-type zinc finger family protein (.1) AT3G22180 258 / 8e-77 DHHC-type zinc finger family protein (.1) AT2G33640 242 / 4e-72 DHHC-type zinc finger family protein (.1) AT4G01730 136 / 4e-34 DHHC-type zinc finger family protein (.1) AT5G41060 80 / 9e-16 DHHC-type zinc finger family protein (.1.2) AT3G48760 79 / 2e-15 DHHC-type zinc finger family protein (.1) AT3G26935 78 / 4e-15 DHHC-type zinc finger family protein (.1) AT5G04270 76 / 5e-15 DHHC-type zinc finger family protein (.1) AT4G24630 77 / 1e-14 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163200 [exp] 963 / 0 AT1G69420 563 / 0.0 DHHC-type zinc finger family protein (.1.2) Potri.002G006900 [exp] 281 / 5e-86 AT2G33640 553 / 0.0 DHHC-type zinc finger family protein (.1) Potri.006G020800 [exp] 261 / 1e-77 AT4G15080 786 / 0.0 DHHC-type zinc finger family protein (.1) Potri.016G018400 [exp] 257 / 3e-76 AT4G15080 800 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G254366 [exp] 217 / 7e-66 AT2G33640 395 / 1e-135 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 170 / 6e-46 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 167 / 5e-45 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 79 / 2e-15 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G041000 [exp] 76 / 1e-14 AT3G04970 520 / 0.0 DHHC-type zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036798 [exp] 784 / 0 AT1G69420 766 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10037133 [exp] 620 / 0 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10030426 [exp] 533 / 0 AT1G69420 606 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10026632 [exp] 526 / 0 AT1G69420 588 / 0.0 DHHC-type zinc finger family protein (.1.2) Lus10016036 [exp] 261 / 1e-78 AT2G33640 585 / 0.0 DHHC-type zinc finger family protein (.1) Lus10039043 [exp] 261 / 2e-77 AT4G15080 830 / 0.0 DHHC-type zinc finger family protein (.1) Lus10027339 [exp] 254 / 4e-75 AT4G15080 822 / 0.0 DHHC-type zinc finger family protein (.1) Lus10025157 [exp] 196 / 3e-55 AT2G33640 392 / 2e-130 DHHC-type zinc finger family protein (.1) Lus10038029 [exp] 174 / 3e-47 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10009971 [exp] 108 / 7e-25 AT4G01730 432 / 5e-148 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G091700.1 pacid=42808822 polypeptide=Potri.008G091700.1.p locus=Potri.008G091700 ID=Potri.008G091700.1.v4.1 annot-version=v4.1 ATGAGAAAGCATGGATGGCAACTTCCTTATCACCCTCTTCAGGTGGTGGCTGTTGCTGTATTTCTGGCACTGGGGTTTGCTTTTTATGTGTTCTTTGCTC CTTTTGTGGGGAAGAAGTTATTTCAATACATAGCGATGGGAATCTACACTCCTCTTATTACCTGTGCCTTTGGTCTATATATTTGGTGTGCAGCTGCTGA TCCTGCGGACCCTGGAGTGTTTAGATCCAAAAAGTATCTCAAGATTCCAGACAGTGAAAAGCATAACCCACAGAAGGATTCAAAACTCGGTGGAGGGTCA ACTTCATCAATACATGATGCAAATGCTTCTACAGTTGTAGGAAATTCTCTGGAAAAAGAGGTGGTGGGTGCAGAATCAACTAAGAAAGAGCCCAAGACTC AAATTGATAAGGTGTCATCAGGGAATTCATCTTGTTTCCAGTGGGTTTTCTTTCCTTGTGCTTTTATATGTAATCACTGCAGTTCGAGTGATGAATCTTC TGAGCTACAGATGAGCGAAGATGGCATGTTCTATTGCAGTTTGTGTGAAGTTGAGGTTTTCAAGTACAGCAAGCACTGTAGAGTATGTGACAAATGTGTT GATCGTTTTGATCATCACTGCAGGTGGCTTAACAACTGCATAGGCAAGAAGAACTACAGACAGTTTTTCACACTTATGGTTTCTGCTCTCCTCCTGCTTA TTCTACAATGGTCGACTGGAATCCTTGTACTTATCTGCTGTTTTCTTGAACGGAGGCGATTCTCTGTTGATATCTCTGTTAAACTGGGAAGCAGTTTCTC TTTGGCCCCCTTTGTTATTGTGGTGTTGGCCTGCACCATCTTGGCTATGATTGCAACCCTACCTCTTGCCCAGCTTTTCTTCTTTCATATCCTCCTTATA AAAAAGGGAATCAGCACTTATGATTACATAATAGCTCTAAGGGAGCAGGAACAAGAGCAACAAGGTGTTGATGGCCAGCAGAGTGCGCAAATGTCTCCAG CCAGTTCACTTACTGGATTAAGCAGTGCAAGCTCATTTTCTACTTTTCACCGGGGTGCTTGGTGCACACCACCTCGCCTTTTTCTGGAAGATCAGTTTGA TGTTGTTCCTCCAGAGACTGGATCTGTCAGCTCATTAGGAAAGAAGACTATTGGAGAAGAACCAATCAAGAAAAAGAACCCGGCGGCAGTAAAGATCAGT CCTTGGACTTTGGCCAGATTAAACGCAGAAGAAGTTTCAAGAGCTGCAGCAGAGGCGAGAAAGAAGTCGAAAATCCTGCAGCCTGTGACAAGAAGGGAAC CTCCTTTTGGGCTAGACATGGATAGCAGCTTTGGCAGCAGTGGCCGTCGGATGGTCCCAAGGACTGATAGTAATAGAAGGAGAGCTAGTAAGCGAATACG CATTCCAGCTGACCTACCCATGGAGTCTGCAACTAAGGCTTCAGGTATAGCTCCTGACAAGGGTTTCACTGAGACATCAACAAGCTTGGCTCCTCTCCAG CTTGAGGCCCGTAGCGCTTTCCAAACAAGCCGAGCAATGTCAAACTCAGCTGGGGTTGTTGCTTCTTCTCCTGAGAGCAGTTTAGACTCCCCAGATATCC ACCCTTTCCGGGTTTCCTCATCCGGAGAGTCGAGACGTCTCATGGGTCTATCAGTGGGTGGTCCTGTTTCTCACAATTTATTTCCACTTTCAAGGTCTAC CAGTGATGGCTATGAAGCTTCTGGCGGGGAAGATAGTGACAGGGTTTCTTCCAGGATTGCTCAAAGGTCTAATAACTGGAGTAACCTTCTCTTCCGTGCT GATCAGGATGAGAGTGTCTTTAGATTGAAAGCATCATCTTCATCCAGCCAGGCACAATAG
AA sequence Show only first row Show all	>Potri.008G091700.1 pacid=42808822 polypeptide=Potri.008G091700.1.p locus=Potri.008G091700 ID=Potri.008G091700.1.v4.1 annot-version=v4.1 MRKHGWQLPYHPLQVVAVAVFLALGFAFYVFFAPFVGKKLFQYIAMGIYTPLITCAFGLYIWCAAADPADPGVFRSKKYLKIPDSEKHNPQKDSKLGGGS TSSIHDANASTVVGNSLEKEVVGAESTKKEPKTQIDKVSSGNSSCFQWVFFPCAFICNHCSSSDESSELQMSEDGMFYCSLCEVEVFKYSKHCRVCDKCV DRFDHHCRWLNNCIGKKNYRQFFTLMVSALLLLILQWSTGILVLICCFLERRRFSVDISVKLGSSFSLAPFVIVVLACTILAMIATLPLAQLFFFHILLI KKGISTYDYIIALREQEQEQQGVDGQQSAQMSPASSLTGLSSASSFSTFHRGAWCTPPRLFLEDQFDVVPPETGSVSSLGKKTIGEEPIKKKNPAAVKIS PWTLARLNAEEVSRAAAEARKKSKILQPVTRREPPFGLDMDSSFGSSGRRMVPRTDSNRRRASKRIRIPADLPMESATKASGIAPDKGFTETSTSLAPLQ LEARSAFQTSRAMSNSAGVVASSPESSLDSPDIHPFRVSSSGESRRLMGLSVGGPVSHNLFPLSRSTSDGYEASGGEDSDRVSSRIAQRSNNWSNLLFRA DQDESVFRLKASSSSSQAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	0	1
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	1.00	0.9391
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	2.00	0.9386	ALDH22.1
AT1G10180			unknown protein		Potri.015G119300 [exp]	2.64	0.9163
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	3.46	0.9260
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.001G467600 [exp]	4.47	0.9136
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.014G073800 [exp]	4.89	0.9282
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	6.32	0.9192
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	6.92	0.8952
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	8.48	0.9024
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	10.39	0.9147

Compare expression of checked genes

Potri.008G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.