Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	WRKY3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 406 / 2e-137 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 384 / 1e-128 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 260 / 5e-82 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26640 254 / 8e-79 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 252 / 1e-77 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT5G56270 253 / 2e-76 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 246 / 7e-75 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT5G07100 222 / 5e-70 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G37260 216 / 1e-65 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT4G12020 216 / 7e-61 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 638 / 0 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.004G120800 [exp] 371 / 3e-123 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.017G088300 [exp] 283 / 7e-89 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2) Potri.011G169300 [exp] 272 / 3e-83 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 267 / 9e-83 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.001G472800 [exp] 268 / 2e-81 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.006G133200 [exp] 259 / 1e-80 AT2G37260 330 / 3e-109 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 258 / 2e-79 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.016G128300 [exp] 257 / 5e-79 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037131 [exp] 376 / 7e-127 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 372 / 7e-125 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 368 / 1e-123 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10036800 [exp] 353 / 8e-118 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10015377 [exp] 356 / 1e-117 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 339 / 8e-114 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10033000 [exp] 298 / 4e-95 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10027139 [exp] 281 / 9e-87 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 280 / 4e-86 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10001265 [exp] 271 / 9e-85 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G091900.1 pacid=42808040 polypeptide=Potri.008G091900.1.p locus=Potri.008G091900 ID=Potri.008G091900.1.v4.1 annot-version=v4.1 ATGGCTGATGAAAAGGAGCATCAGCAGCCAAAACAGCAGCAGCCATCTTCCCGCCCGATCACCATAACACTCCCTCCACGTTCCTTCACCGAAACTTTCT TGTCCAGTGGTCCTCCTGGTTCCATGGGCTTCAGTCCAGGTCCTATGACTCTTCTCTCTGGGTTCTTCTCCGACTCGGACGACTGCAAGTCCTTCTCTCA GCTTCTTGCCGGCGCCACGGCCTCCCCTAATTTCAAACCAACCGATGACAAGAGCTCCGCCGGGGACTTTAGCAGGCCGGGAAACTTGTCGATCGTCCCT CCCTCGCCGATGTTCACGATGCCGCTGGGGCTCTGTCCGGTGGCTCTTCCTGATTCACCGGGGTTCGAGCTCTTCTCTCCTGAGGGCTTTGGAATGATAC ACCAGCAGGCACTAGCACAGGTCACGGCACAGGCTGCACAAGCCAATTCAAATATGCATGTTCAACAGGAGTATTCGACATCGGCAATGTCTTCGACACA GTTTTTGACCTCTATCAATAATTCAGCAGCGCAGCAGCAGCAGCAGCAGCAAATGGCAGGCTCAGTAACGGACTCTAGAGTTACAGTGCAGGAACTGTCG GGCATTCCTCACGCTGATCGGATCAGATCCGAATCTTCTTCTTTGGCTGTTGACAAGCCCACTGATGATGGATACAACTGGAGGAAATATGGGCAGAAAC AGGTGAAAGGAAGCGAATTTCCTAGAAGTTATTATAAATGTACACATCCTAACTGTCCTGTCAAGAAAAAAGTTGAGCGATCACTTGATGGTCAAGTAAC TGAAATTATCTACAAGGGGCAACACAATCATGAACCACCACAACCCAATAAGCGTGGAAAGGAAGGGATAAACGGCAATTCAAACAGTCAGGGGAATTTT GAAATGGCTACCCTTCAAAGTGGATATGTCAGAAAAACGAGAGATAGGAAGGATCAGGAATCCAGTCAAGCTACACCTGAACATGTATCTGGGATGAGTG ATTCTGAGGAAGTTAGTGACACTGAAACTGGTGGTCGGATTGATGAAGATGAGCCTGGTCATAAGAGAAGAATAACTACAGAGGTTAGAGTGACAGAACC AGCTTCTTCACACAGGACTGTGACAGAGTCTAGAATCGTTGTGCAGACAACCAGTGAAGTTGATCTCTTAGATGACGGCTATAGATGGCGCAAGTATGGG CAGAAAGTTGTCAAAGGCAATCCTTATCCAAGGAGTTACTATAAATGCACAACCCCAGGATGCAAAGTCCGTAAACATGTAGAGAGGGCTGCAGCAGACC CTCGAGCCGTTATAACAGCCTATGAGGGCAAACATAATCACGATGTACCAGCAGCTAAAAATAGCAGCCACATCACAGTCAATAGCAATGCATCTCAGCT GAAACCACAAACTCTGGAGAAGCGTGCATCAAACAACAGCAACAATCAACAGCCTATAGCACGTTTGCGGTTAAAATAA
AA sequence Show only first row Show all	>Potri.008G091900.1 pacid=42808040 polypeptide=Potri.008G091900.1.p locus=Potri.008G091900 ID=Potri.008G091900.1.v4.1 annot-version=v4.1 MADEKEHQQPKQQQPSSRPITITLPPRSFTETFLSSGPPGSMGFSPGPMTLLSGFFSDSDDCKSFSQLLAGATASPNFKPTDDKSSAGDFSRPGNLSIVP PSPMFTMPLGLCPVALPDSPGFELFSPEGFGMIHQQALAQVTAQAAQANSNMHVQQEYSTSAMSSTQFLTSINNSAAQQQQQQQMAGSVTDSRVTVQELS GIPHADRIRSESSSLAVDKPTDDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHEPPQPNKRGKEGINGNSNSQGNF EMATLQSGYVRKTRDRKDQESSQATPEHVSGMSDSEEVSDTETGGRIDEDEPGHKRRITTEVRVTEPASSHRTVTESRIVVQTTSEVDLLDDGYRWRKYG QKVVKGNPYPRSYYKCTTPGCKVRKHVERAAADPRAVITAYEGKHNHDVPAAKNSSHITVNSNASQLKPQTLEKRASNNSNNQQPIARLRLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	0	1	WRKY3.1
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.003G142201 [exp]	2.82	0.9470
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G031251 [exp]	4.00	0.9391
AT2G25440		AtRLP20	receptor like protein 20 (.1)		Potri.012G007800 [exp]	9.16	0.9303
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096000 [exp]	9.79	0.9285
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	10.09	0.9367
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G007932 [exp]	11.61	0.9271
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Potri.001G375800 [exp]	13.78	0.9328
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.006G036100 [exp]	15.36	0.9337
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G095900 [exp]	16.61	0.9132
					Potri.011G087000 [exp]	18.43	0.8897

Compare expression of checked genes

Potri.008G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.