Plant FIBer expression Database

Potri.008G092400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G69380 504 / 3e-180 RRG RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
AT5G13610 351 / 2e-119 Protein of unknown function (DUF155) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G162500
[exp]
691 / 0 AT1G69380 511 / 0.0 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Potri.008G045200
[exp]
391 / 5e-135 AT5G13610 436 / 5e-152 Protein of unknown function (DUF155) (.1)
Potri.010G216300
[exp]
387 / 4e-133 AT5G13610 424 / 3e-147 Protein of unknown function (DUF155) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036803
[exp]
526 / 0 AT1G69380 479 / 4e-170 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Lus10037127
[exp]
463 / 3e-164 AT1G69380 415 / 2e-145 RETARDED ROOT GROWTH, Protein of unknown function (DUF155) (.1)
Lus10001978
[exp]
366 / 6e-125 AT5G13610 457 / 4e-160 Protein of unknown function (DUF155) (.1)
Lus10030300
[exp]
360 / 2e-122 AT5G13610 454 / 4e-159 Protein of unknown function (DUF155) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02582 DUF155 Uncharacterised ACR, YagE family COG1723
Representative CDS sequence
>Potri.008G092400.5 pacid=42806670 polypeptide=Potri.008G092400.5.p locus=Potri.008G092400 ID=Potri.008G092400.5.v4.1 annot-version=v4.1
ATGGGCAGCAGGTGGAGAGCTACTGCTTCTCTTCTCCTCGACCACATAACCACAAAAGCTTCTGACTTTCTTTCACCTAACCTTCCCAAACCTCTTAATC
GCTCACACCCTTTAATCCATACTGTCCGTGGCTTCAAATTCAGGCCATTTTCTGCAATCCCTTCCCGGGTTTCGGTTTATAGCAATGAAATTGAATCCGG
GTCTCATGATTTGGCTCTTAATTATCCTTTGGGACCTAAAGAAGATGAGGAAACTGGAAAGATTCCCGTCAAAGCTTACTTCCTTTGTACCAGTATTAAT
TTGAAGAGCATGCAAGCAGAGAATTTAAGCAATGTTGTTCCTCCTACCTCTCGCTCGACAAATTATACTGTCCTCAGATTTTTCAATTTCTCTTCAGACA
TTAGTGCACTTGGAATAGGAGGGTATGTCAGCTGCCGATACATGGTTGTATTCCAATATGGATCTGCTGTTCTATTTAATATCGAGGATCATGAAGTTGA
AAGGTACCTGGAAATAGTAAGGAGGCACACTTCTGGATTGCTTTCCGAGATGAGGAAAGATGATTATGCCATAATAGAGAAACCACTTCTGGCTGAGGAC
ATGCAGGGAGGTCTAGATTACATCGTTCTCAAAACCTTAGACACTGATAGTATTCGCATTATTGGAAGTGTGCTTGGGCAAAGCATAGCTTTGGACTATT
TTGTTTCACAGGTTGACGGGATGGTTGAAGAGTTTTCTGGCATAAATCGTGCAATGGAAAAAACTGGAACTTTCACAATGGACAGGAAAAAGCTCCTTCA
ACTTGTTGGGAAGGCTAATTCAAATCTAGCTGATGTGATTCTAAAAGTCGGTCTTTTTGAGAGATCTGAAATTGCTTGGAGGGATGCAAAATATGCTCAA
ATATATGAGTACCTCAGGGAGGAGTATGAAGTTACTCAACGCTTTGGAAGTTTGGATTACAAATTAAAATTTGTAGAGCACAACATTCATTTCCTTCAAG
AAGTTATCCAAAACAGACGATCTGATCTTCTGGAATGGTGCATTATATTCCTGCTGAGCATAGAGAATATAATATCAATTTATGAGATAGTTCAAGGATG
A
AA sequence
>Potri.008G092400.5 pacid=42806670 polypeptide=Potri.008G092400.5.p locus=Potri.008G092400 ID=Potri.008G092400.5.v4.1 annot-version=v4.1
MGSRWRATASLLLDHITTKASDFLSPNLPKPLNRSHPLIHTVRGFKFRPFSAIPSRVSVYSNEIESGSHDLALNYPLGPKEDEETGKIPVKAYFLCTSIN
LKSMQAENLSNVVPPTSRSTNYTVLRFFNFSSDISALGIGGYVSCRYMVVFQYGSAVLFNIEDHEVERYLEIVRRHTSGLLSEMRKDDYAIIEKPLLAED
MQGGLDYIVLKTLDTDSIRIIGSVLGQSIALDYFVSQVDGMVEEFSGINRAMEKTGTFTMDRKKLLQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQ
IYEYLREEYEVTQRFGSLDYKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLSIENIISIYEIVQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G69380 RRG RETARDED ROOT GROWTH, Protein ... Potri.008G092400
[exp]
0 1
Potri.010G182150
[exp]
1.00 0.8980
AT4G21520 Transducin/WD40 repeat-like su... Potri.004G034600
[exp]
4.89 0.8292
AT5G21140 EMB1379 embryo defective 1379 (.1) Potri.004G195600
[exp]
7.48 0.7949
AT1G56440 TPR5 tetratricopeptide repeat 5, Te... Potri.013G008400
[exp]
7.74 0.7953
AT3G61620 RRP41 3'-5'-exoribonuclease family p... Potri.014G094300
[exp]
10.00 0.7846 RRP41.1
AT2G25740 ATP-dependent protease La (LON... Potri.006G236400
[exp]
10.39 0.8303
AT3G07510 unknown protein Potri.014G176400
[exp]
13.03 0.7663
AT5G10830 S-adenosyl-L-methionine-depend... Potri.005G067500
[exp]
14.69 0.7855
AT5G48970 Mitochondrial substrate carrie... Potri.010G024100
[exp]
20.39 0.7814
AT3G45430 Concanavalin A-like lectin pro... Potri.009G035601
[exp]
23.91 0.7543

Potri.008G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.