Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03350 281 / 4e-98 Protein of unknown function, DUF538 (.1) AT5G01610 178 / 1e-57 Protein of unknown function, DUF538 (.1) AT5G37070 178 / 2e-57 Protein of unknown function, DUF538 (.1) AT3G08890 175 / 2e-56 Protein of unknown function, DUF538 (.1.2) AT1G61667 59 / 2e-11 Protein of unknown function, DUF538 (.1) AT5G16380 59 / 8e-11 Protein of unknown function, DUF538 (.1) AT4G02360 56 / 5e-10 Protein of unknown function, DUF538 (.1) AT1G02813 56 / 5e-10 Protein of unknown function, DUF538 (.1) AT3G07470 50 / 6e-08 Protein of unknown function, DUF538 (.1) AT1G55265 48 / 5e-07 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162400 [exp] 326 / 5e-116 AT2G03350 277 / 1e-96 Protein of unknown function, DUF538 (.1) Potri.006G104000 [exp] 174 / 4e-56 AT3G08890 296 / 1e-104 Protein of unknown function, DUF538 (.1.2) Potri.016G125300 [exp] 174 / 5e-56 AT3G08890 292 / 8e-103 Protein of unknown function, DUF538 (.1.2) Potri.014G127500 [exp] 66 / 7e-14 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 62 / 6e-12 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 61 / 9e-12 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 56 / 3e-10 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 54 / 2e-09 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 49 / 1e-07 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026639 [exp] 295 / 2e-103 AT2G03350 262 / 1e-90 Protein of unknown function, DUF538 (.1) Lus10030420 [exp] 292 / 2e-102 AT2G03350 259 / 1e-89 Protein of unknown function, DUF538 (.1) Lus10037126 [exp] 253 / 4e-87 AT2G03350 235 / 3e-80 Protein of unknown function, DUF538 (.1) Lus10036804 [exp] 239 / 2e-81 AT2G03350 224 / 9e-76 Protein of unknown function, DUF538 (.1) Lus10012232 [exp] 181 / 2e-58 AT3G08890 297 / 1e-104 Protein of unknown function, DUF538 (.1.2) Lus10002862 [exp] 177 / 4e-57 AT3G08890 299 / 2e-105 Protein of unknown function, DUF538 (.1.2) Lus10022674 [exp] 157 / 4e-49 AT3G08890 273 / 1e-94 Protein of unknown function, DUF538 (.1.2) Lus10012498 [exp] 130 / 2e-39 AT3G08890 214 / 1e-72 Protein of unknown function, DUF538 (.1.2) Lus10025861 [exp] 59 / 7e-11 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 59 / 1e-10 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.008G092500.4 pacid=42808731 polypeptide=Potri.008G092500.4.p locus=Potri.008G092500 ID=Potri.008G092500.4.v4.1 annot-version=v4.1 ATGGAGAAAGCATTAACAAAAGTGAATAGCTTGAAAGTAGGAAGCTTATGGATCTCAAAGAAAGCAAAAGAAGAGTTCTCCAACATTACTGAAGACATCA ATACTATCTCAAATACTGTTGAAGAGAAGGCAAGATGGGTTTTCAACAAGTTGAAAGGAAAACCACTAAAAAGTTTGCCAGATCTCCTCCGAGAATACAA TTTGCCACCGGGACTTTTTCCCCAGAACATAACTTGCTATGAATTCGATGAATCAAAGGCCAAACTGATTGTGTACTTGTCTTCTGCATGTGAGGTCAGC TTCAAGGACTCTTCTGTAATTAGGTATGCACCTCGAGTAAAGACAATACTTACGAGGGGAAAGCTGACAGGTATTGAGGGAATGAAGACAAAAGTGCTAG TATGGGTTAAGGTTACGAGTGTGGCAGTTGAGAGCTACAAGTCTGATAAGGTTTGGTTTACAGCTGGTGTCAAGAAGTCTAGGCCTAAAATTGCATATGA TGTACCACAGGCTGCTATCAGGGTTGAGGAATTTTGA
AA sequence Show only first row Show all	>Potri.008G092500.4 pacid=42808731 polypeptide=Potri.008G092500.4.p locus=Potri.008G092500 ID=Potri.008G092500.4.v4.1 annot-version=v4.1 MEKALTKVNSLKVGSLWISKKAKEEFSNITEDINTISNTVEEKARWVFNKLKGKPLKSLPDLLREYNLPPGLFPQNITCYEFDESKAKLIVYLSSACEVS FKDSSVIRYAPRVKTILTRGKLTGIEGMKTKVLVWVKVTSVAVESYKSDKVWFTAGVKKSRPKIAYDVPQAAIRVEEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	0	1
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	1.00	0.9686
AT5G64180			unknown protein		Potri.015G005600 [exp]	2.44	0.9514
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	3.46	0.9331	SYP131.2
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.004G074500 [exp]	3.46	0.9423
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.011G077900 [exp]	3.74	0.9352
AT2G32980			unknown protein		Potri.014G158000 [exp]	4.24	0.9461
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	5.83	0.9296
AT2G45530			RING/U-box superfamily protein...		Potri.011G149200 [exp]	7.48	0.9346
AT5G23550			Got1/Sft2-like vescicle transp...		Potri.004G135000 [exp]	7.74	0.9290
AT1G09645			unknown protein		Potri.019G077100 [exp]	8.77	0.9338

Compare expression of checked genes

Potri.008G092500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.