Plant FIBer expression Database

Potri.008G092800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13940 460 / 8e-145 Plant protein of unknown function (DUF863) (.1)
AT1G69360 427 / 1e-133 Plant protein of unknown function (DUF863) (.1)
AT1G26620 361 / 3e-109 Plant protein of unknown function (DUF863) (.1)
AT5G07790 54 / 7e-07 unknown protein
AT5G61300 52 / 3e-06 unknown protein
AT1G12120 48 / 4e-05 Plant protein of unknown function (DUF863) (.1)
AT5G67390 44 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G162000
[exp]
1654 / 0 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1)
Potri.004G125900
[exp]
350 / 6e-104 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1)
Potri.017G088900
[exp]
317 / 6e-92 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1)
Potri.018G090000
[exp]
56 / 6e-08 AT5G57340 72 / 8e-15 unknown protein
Potri.006G262600
[exp]
52 / 3e-06 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1)
Potri.003G112000
[exp]
51 / 4e-06 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Potri.006G165500
[exp]
49 / 1e-05 AT5G57340 62 / 2e-11 unknown protein
Potri.001G121200
[exp]
48 / 4e-05 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
Potri.018G020800
[exp]
47 / 5e-05 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030419
[exp]
645 / 0 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1)
Lus10026640
[exp]
481 / 2e-154 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1)
Lus10036807
[exp]
347 / 5e-105 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1)
Lus10037122
[exp]
346 / 8e-105 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1)
Lus10021644
[exp]
77 / 7e-14 AT1G13940 105 / 5e-23 Plant protein of unknown function (DUF863) (.1)
Lus10034722
[exp]
71 / 5e-12 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1)
Lus10024611
[exp]
54 / 8e-07 AT1G12120 97 / 6e-22 Plant protein of unknown function (DUF863) (.1)
Lus10011080
[exp]
47 / 3e-05 AT5G67390 91 / 7e-23 unknown protein
Lus10019291
[exp]
46 / 5e-05 AT5G67390 95 / 2e-24 unknown protein
Lus10011531
[exp]
45 / 0.0001 AT5G67390 97 / 3e-25 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05904 DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence
>Potri.008G092800.3 pacid=42807808 polypeptide=Potri.008G092800.3.p locus=Potri.008G092800 ID=Potri.008G092800.3.v4.1 annot-version=v4.1
ATGGGAACAAAAGTGCAGTGTGAAAGTTACTTCCCAGGATATTTCTCAATGAGGGATCTTAATGAGGATTCTAACAGTTGTAGCTGGCCCCTGTTCTATG
GAGATAAAACCTTTACAAATGGGCAGCATTACAATGGTCTCTTGCCTAGGGTCATTGCAGATGCTTATCCAGGGAACGATAAGGACGTAGTAAAGCAGAC
AATGCTTGAGCATGAGGCCATATTTAAGAGACAGCTCCGTGAACTTCACCGTATATACAGAATACAGAGGGACTTAATGGATGAAATTAAAAGGAAAGAA
CTACTTAAAAATCAATTGCCTGTTGAGACATCATTTTCATCTAGCCCTTTAGCTTCCCAGATTACATCCGAAGATGCTCGTAAATGGCATATCCCTAGTT
TCCCATTGGCAAGTTCAATATGTGCCAGACCATCCACATCAGGCATTGAAGATATTCATTCTCCTTTGAGCTCTTTGAAAGGAAGCAGTGCACAAGCTAG
TCCCTTGCCATCTCAAAATGGTGGAGCTTCAAAAGATGTGGAGATTCTAGAGTCCAGACCATCAAAGGTGAGAAGAAAGATGTTTGATCTTCAGCTTCCA
GCTGATGAATACTTAGATACTGAAGAAGGGGAACAATTAAGGGACGAAAATGTATCTGGAATTTCAAGTTATGTGTCCAACAGGAATCCTAAAATTGCAT
CTCAGAATGAAAGAAATCTTCTTCTTGGCAATGGTGGGAAGAATAATTGCCAAGGAGATGCATCAAGATCTGAGTCATGTTTAAGGAGCCCAGTTAATGT
GGGTGACTTGAACAAGCCTATCGAGGTTGAAGAGGCAAATGCTTCTGCATATGTTGATATTTTAGGTTGCACCTCCTCCCAAGCAGTGAGCCAAGGACAT
GAACTAGCTCCTAAGCCAAAACAAGAGCTTCTAGGTTTTCACAAGGAAAGTTCAGCAAATTTCCATTACAGGAGTGACAATGGGACTCTCAATAGTCCAC
ATTTGCAACATAATGCCAGCGGAAAATGCTGGTTTCCGCATGCACTTGACTCAGGGCACAGCAAAAATAATTTGAAGTCTGCTTCTCCAGAAAAACCTAC
CTCTTCCCAGCCAATGCAAGTTCTGTTTAGTAAAACTCATGAATCTCCTACCTTTTTTCTAACTGATCAAGGCAAGATTGATCTGTTGAGAGAGAGAACA
GCTCATGGTTTAGAACTTTCTGAAAGAAATCACGAGATCTCCCATAGTAACTATTCAGAGTCAGTTGTTGCTTCTCGTATACCCAGTCCATATCCAATTG
GTCCTCCTTCTGATGTGGGAAAGTTCTGGCGTCACTCTGTTTCCTCCTGGGAAAAGTCTGCTGTTAGCTTAAGCCAGAAATCAATGTCAGTTCAAAAGCA
CCCGTATTTGAATTCATCTGCAACTTTGAGTAGGAGCTCACAGTCATCAACTCAGAGCCATGGGTTTTTAGGAGACCAATGGAATTATAACAGAAATTCT
ACATCTAACCCAAGCTTTGTTTGTGAAATGCCCAACCGAGATGGATTTTACCATGGGTCCTCATCAGGGTCCAAGGAACCATCAGTTCACCTTCCTTCAG
GAAACTATGAGTATTGGAACTGTGCTGGTACTAACAATAGAGCATCTGGGCATTTCATCAATCACAGTTCAGCAAACTTCTACAAGAGTCCAAATTGTAT
GGACTCGAAGCTGGCTTGGGATGTGAACTTGAATGCAGTGCTTTCGAACAGCTCATCGAACAAGGTGGCACACCAGCAAGGTATTGAAGTTATAGATTTA
GAAAGAAAGCATGAGGATCATCTCGCAGCTTTGCCTTGGCTTAAAGCTAAGCGTGCTTTTAAGAATGAGGGCACCAAGGGGATGGATTTAAATATGGGGG
AATCGACTTTCTTATCTTCTCTGAATCAATTACAAGATAAGAGTGAAATTGGAAAGGTTCCTAATCAAATAGCTGTTCAGAAAATGAATTTGGCTTCCTG
TCCCAATGTTGTTGAGACCAGTGTGATTCAAGGTAGCGACTCAAGCTGCAGAAAAATTCTTGGGTTTCCAATTTTTGAAAAGCCTCATATTCCTAAGAAT
GAGTCTTCTTCCTTCACCTCTTCTTCTGTGGCCCTTCCTCGGCTATCTGAAGAAGTGGAAAATAGCAAGAAAAATAAGGTATTTGATATAAACTTACCTT
GTGATCCAGCTGTTCCTGACTTGGCTCAACAGACTGCAGAAGAAATTGTGGTTGTTGCAAAAGAACCAGCTACAAAAGTTGCCAATTTCAGATGCCAGAT
TGACTTGAACTCTTGCATCAATGATGATGAAACTTCTCTGATGCCTTCTGTTCCAGTCTTCAGTGCAAAGATTGTTGTAGGAATAGATTTGGAAGCCCCT
GCAGTTCCTGAGATTGAGGAGAATATCATTTCCACAGAAGAAAAGGGACATGAAGCGGCTTTACAGTCAACAGAGCACAGAGTTGAAATCCCAACCGATG
AACTTATCAGAATAGCAGCCAAGGCAATAGTTGCCATTTCATCAACTAGTTGCCAGAATCATTTGGATGATGCCACTTGCAATCTGCGTGAAGCTTCTAT
GACAGACCCTCTTCATTGGTTTGTGGAGATAGTTTCATCTTGTGGAGAGGATCTAGAGAGCAAGTTTGATGCTGTTTCAAGAGCCAAAGATTGTGATGGT
AATTTGGAGACATCATGGGAAGTAATTGATTACTTTGAGTCGATGACTTTGAGATTGACAGAGACCAAGGAAGAAGACTATATGCCCAAGCCTTTGGTTC
CAGAAAACCTGAAACTGGAAGATACAGGAACCACTCCTGTACCGACACGAACCCGAAGGGGCCAGGGAAGAAGAGGAAGGCAACGGAGGGACTTCCAGAG
GGACATTCTTCCTGGCCTTGCCTCACTCTCGAGACACGAGGTGAGAGAAGATCTTCAAACATTCGGAGGGATGATGAGAGCCACAGGTCATCCTTGGCAG
TCAGGATTAACGAGAAGGAACTCTACTAGAAATGGTTGTGCAAGGGGGGGACGGCGCTCGCTGGTTAGCCCCTCACCTCCAGTGACCGCAAGCCCACCTT
GCACTCCACTAATTCAGCAGCTTCATAATATTGAAGTGGGACTGGAGGACAGAAACCTAACAGGGTGGGGGAAGACAACTAGACGCCCCCGCCGGCAAAG
ATGCCCCGCAGGTAATCCTCCATCCCACCCTTTAACCTAA
AA sequence
>Potri.008G092800.3 pacid=42807808 polypeptide=Potri.008G092800.3.p locus=Potri.008G092800 ID=Potri.008G092800.3.v4.1 annot-version=v4.1
MGTKVQCESYFPGYFSMRDLNEDSNSCSWPLFYGDKTFTNGQHYNGLLPRVIADAYPGNDKDVVKQTMLEHEAIFKRQLRELHRIYRIQRDLMDEIKRKE
LLKNQLPVETSFSSSPLASQITSEDARKWHIPSFPLASSICARPSTSGIEDIHSPLSSLKGSSAQASPLPSQNGGASKDVEILESRPSKVRRKMFDLQLP
ADEYLDTEEGEQLRDENVSGISSYVSNRNPKIASQNERNLLLGNGGKNNCQGDASRSESCLRSPVNVGDLNKPIEVEEANASAYVDILGCTSSQAVSQGH
ELAPKPKQELLGFHKESSANFHYRSDNGTLNSPHLQHNASGKCWFPHALDSGHSKNNLKSASPEKPTSSQPMQVLFSKTHESPTFFLTDQGKIDLLRERT
AHGLELSERNHEISHSNYSESVVASRIPSPYPIGPPSDVGKFWRHSVSSWEKSAVSLSQKSMSVQKHPYLNSSATLSRSSQSSTQSHGFLGDQWNYNRNS
TSNPSFVCEMPNRDGFYHGSSSGSKEPSVHLPSGNYEYWNCAGTNNRASGHFINHSSANFYKSPNCMDSKLAWDVNLNAVLSNSSSNKVAHQQGIEVIDL
ERKHEDHLAALPWLKAKRAFKNEGTKGMDLNMGESTFLSSLNQLQDKSEIGKVPNQIAVQKMNLASCPNVVETSVIQGSDSSCRKILGFPIFEKPHIPKN
ESSSFTSSSVALPRLSEEVENSKKNKVFDINLPCDPAVPDLAQQTAEEIVVVAKEPATKVANFRCQIDLNSCINDDETSLMPSVPVFSAKIVVGIDLEAP
AVPEIEENIISTEEKGHEAALQSTEHRVEIPTDELIRIAAKAIVAISSTSCQNHLDDATCNLREASMTDPLHWFVEIVSSCGEDLESKFDAVSRAKDCDG
NLETSWEVIDYFESMTLRLTETKEEDYMPKPLVPENLKLEDTGTTPVPTRTRRGQGRRGRQRRDFQRDILPGLASLSRHEVREDLQTFGGMMRATGHPWQ
SGLTRRNSTRNGCARGGRRSLVSPSPPVTASPPCTPLIQQLHNIEVGLEDRNLTGWGKTTRRPRRQRCPAGNPPSHPLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G13940 Plant protein of unknown funct... Potri.008G092800
[exp]
0 1
AT2G35110 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNAR... Potri.012G124400
[exp]
1.41 0.7740
AT5G48820 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibit... Potri.017G054000
[exp]
3.00 0.7431
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.008G128800
[exp]
6.78 0.7693
AT3G04910 ATWNK1, ZIK4, W... with no lysine (K) kinase 1 (.... Potri.005G049800
[exp]
10.58 0.6926
AT5G44180 HD Homeodomain-like transcription... Potri.017G016200
[exp]
10.95 0.7401
AT1G34260 FAB1D FORMS APLOID AND BINUCLEATE CE... Potri.019G087000
[exp]
11.74 0.7149
AT5G65170 VQ motif-containing protein (.... Potri.005G166100
[exp]
11.83 0.7129
AT2G24240 BTB/POZ domain with WD40/YVTN ... Potri.018G107600
[exp]
17.74 0.7218
AT1G28260 Telomerase activating protein ... Potri.011G053800
[exp]
17.74 0.6951
AT2G02820 MYB ATMYB88 myb domain protein 88 (.1.2) Potri.008G148400
[exp]
19.89 0.6935 MYB124.1

Potri.008G092800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.